Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1292

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1291: 9659 - KOG3350 Uncharacterized conserved protein, at 845100 to 846215 9659 mRNA_1292: 9660 - K10848 ERCC4, XPF DNA excision repair protein ERCC-4, at 846383 to 850419 9660 mRNA_1293: 9661 - Hypothetical Protein, at 850858 to 851999 9661

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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845,448 + 9659 mRNA_1291 0.31 1.5
845,880 - 9659 mRNA_1291 0.70 1.2
846,183 + 0.3
846,636 + -1.1
846,942 - 9660 mRNA_1292 0.14 1.2
847,205 - 9660 mRNA_1292 0.20 -2.0
847,222 + 9660 mRNA_1292 0.21 1.3
847,772 + 9660 mRNA_1292 0.34 0.0
847,877 + 9660 mRNA_1292 0.37 -0.2
848,237 + 9660 mRNA_1292 0.46 -0.4
848,511 + 9660 mRNA_1292 0.53 0.5
848,525 - 9660 mRNA_1292 0.53 1.7
848,672 - 9660 mRNA_1292 0.57 1.5
849,014 + 9660 mRNA_1292 0.65 -0.6
849,450 - 9660 mRNA_1292 0.76 -0.9
849,688 - 9660 mRNA_1292 0.82 0.2
849,740 + 9660 mRNA_1292 0.83 0.6
849,896 - 9660 mRNA_1292 0.87 0.8
850,122 - 0.9
850,141 - 4.2
850,148 + -0.6
850,290 - -0.4
850,299 + 2.0
850,307 + 0.7
850,325 - 1.5
850,344 + 0.4
850,420 + -0.6
850,487 + 1.0
850,546 - 1.5
850,602 - -0.2
850,740 - -0.0
850,743 - 2.1
850,744 - 0.2
850,884 + 1.0
850,936 + 0.4
851,035 + 9661 mRNA_1293 0.15 0.6
851,206 - 9661 mRNA_1293 0.30 0.2