Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1270

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1269: 9637 - K15628 PXA ATP-binding cassette, subfamily D (ALD), peroxisomal long-chain fatty acid import protein, at 796569 to 799890 9637 mRNA_1270: 9638 - KOG0254 Predicted transporter (major facilitator superfamily), at 800593 to 802936 9638 mRNA_1271: 9639 - K05349 bglX beta-glucosidase, at 803420 to 806888 9639

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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799,623 - -0.3
799,635 - 0.3
799,778 - 0.3
799,917 + 0.6
799,946 + -1.6
799,974 - 0.5
800,046 - 0.4
800,083 - 1.4
800,125 - -0.3
800,198 - -1.4
800,220 - -0.1
800,240 - 0.1
800,242 + -0.1
800,245 + -0.4
800,246 - 1.7
800,247 + 2.7
800,366 + 3.0
800,508 - 0.2
800,516 + 1.1
800,593 - -0.2
800,637 - -0.4
800,652 - -0.6
800,694 - 2.8
800,711 - 1.0
800,721 + 0.4
800,961 + 9638 mRNA_1270 0.16 0.0
801,332 + 9638 mRNA_1270 0.32 -0.8
801,398 + 9638 mRNA_1270 0.34 -0.4
801,401 + 9638 mRNA_1270 0.34 0.4
801,411 - 9638 mRNA_1270 0.35 -0.6
801,669 - 9638 mRNA_1270 0.46 2.7
801,784 + 9638 mRNA_1270 0.51 0.5
801,854 - 9638 mRNA_1270 0.54 1.4
802,273 + 9638 mRNA_1270 0.72 0.6
802,283 + 9638 mRNA_1270 0.72 0.5
802,423 + 9638 mRNA_1270 0.78 1.5
802,994 + 0.4
803,005 + -0.4
803,020 + -2.4
803,137 - -0.0
803,141 + -1.1
803,158 + 2.8
803,183 - 1.9
803,199 - 1.3
803,296 + 0.6
803,302 + -0.6
803,311 - 2.4
803,333 + 0.5
803,456 - -0.3
803,463 + 0.1
803,464 - 1.7
803,465 - -0.1
803,623 - -1.2
803,787 + 9639 mRNA_1271 0.11 -0.7
803,864 + 9639 mRNA_1271 0.13 0.1
803,894 - 9639 mRNA_1271 0.14 1.2