Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1267

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1266: 9634 - K00004 BDH, butB (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase, at 791102 to 792635 9634 mRNA_1267: 9635 - K00814 GPT, ALT alanine transaminase, at 793138 to 795041 9635 mRNA_1268: 9636 - K03790 rimJ ribosomal-protein-alanine N-acetyltransferase, at 795406 to 796307 9636

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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792,352 - 9634 mRNA_1266 0.81 1.6
792,640 + -0.6
792,755 - 0.4
792,761 - 0.6
792,762 - 0.5
792,789 - -0.3
792,789 + 3.1
792,808 - 0.5
792,844 + 0.2
792,846 + -0.2
792,846 + 1.5
792,910 + 0.3
792,943 - 0.5
792,997 + 0.5
793,028 - 0.3
793,032 - -0.4
793,055 - 0.9
793,058 - 3.4
793,065 + -0.9
793,072 - 0.7
793,075 - -2.2
793,084 + -0.7
793,165 + -0.0
793,167 - -0.9
793,218 + 1.8
793,223 - 0.0
793,351 - 9635 mRNA_1267 0.11 -0.5
793,354 + 9635 mRNA_1267 0.11 0.2
793,370 - 9635 mRNA_1267 0.12 -0.3
793,373 + 9635 mRNA_1267 0.12 0.1
793,500 - 9635 mRNA_1267 0.19 2.6
793,507 + 9635 mRNA_1267 0.19 -0.6
793,521 - 9635 mRNA_1267 0.20 -0.0
793,649 - 9635 mRNA_1267 0.27 -2.2
794,072 - 9635 mRNA_1267 0.49 -2.0
794,239 + 9635 mRNA_1267 0.58 -1.3
794,346 + 9635 mRNA_1267 0.63 2.5
794,379 - 9635 mRNA_1267 0.65 1.5
794,503 + 9635 mRNA_1267 0.72 1.4
794,534 + 9635 mRNA_1267 0.73 0.7
794,652 - 9635 mRNA_1267 0.80 0.1
794,860 + 0.1
795,071 + -1.5
795,075 + 1.2
795,102 + 0.7
795,113 + 2.0
795,122 - 1.2
795,130 + 0.1
795,131 - 0.5
795,144 - -0.0
795,229 + 0.7
795,232 - -0.1
795,257 - 0.5
795,274 + 1.3
795,332 - 1.0
795,351 + -1.2
795,446 - -0.1
795,467 + 1.0
795,563 - 9636 mRNA_1268 0.17 1.8
795,874 - 9636 mRNA_1268 0.52 1.3
795,916 - 9636 mRNA_1268 0.57 1.1
795,984 + 9636 mRNA_1268 0.64 -0.8
796,039 + 9636 mRNA_1268 0.70 0.9