Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1262

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1261: 9629 - K04712 DEGS sphingolipid Delta-4 desaturase, at 778890 to 780707 9629 mRNA_1262: 9630 - KOG4781 Uncharacterized conserved protein, at 780962 to 782100 9630 mRNA_1263: 9631 - K06130 LYPLA2 lysophospholipase II, at 782267 to 783226 9631

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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780,112 - 9629 mRNA_1261 0.67 1.2
780,729 - -1.2
780,848 + 1.4
781,567 - 9630 mRNA_1262 0.53 1.5
781,776 + 9630 mRNA_1262 0.71 0.2
781,992 - 1.2
782,011 + 0.2
782,019 + 0.8
782,057 + 2.9
782,108 + -0.1
782,129 - 0.1
782,141 - -0.4
782,148 - -1.3
782,152 - -1.3
782,156 + 2.0
782,156 - 0.2
782,158 + -0.4
782,158 + 0.2
782,170 + 1.9
782,181 - 0.2
782,227 + 1.5
782,265 - -0.7
782,344 - 2.7
782,354 - 1.5
782,909 + 9631 mRNA_1263 0.67 0.3
783,049 - 9631 mRNA_1263 0.81 0.3
783,085 - 9631 mRNA_1263 0.85 0.4
783,098 + 9631 mRNA_1263 0.87 -2.5