Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1255

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1254: 9622 - K02150 ATPeV1E, ATP6E V-type H+-transporting ATPase subunit E, at 761130 to 762354 9622 mRNA_1255: 9623 - KOG1808 AAA ATPase containing von Willebrand factor type A (vWA) domain, at 762538 to 767686 9623 mRNA_1256: 9624 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF81383, at 767980 to 768375 9624

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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762,449 + 0.1
762,483 - 1.8
762,483 - 1.6
762,484 + -0.7
762,486 + 2.2
762,489 - 2.3
762,511 + 0.5
762,586 + -0.9
762,591 - -0.2
762,619 + 1.5
762,635 - 0.1
762,642 + 1.7
762,646 + 1.7
762,669 + 1.8
762,771 - 0.7
762,789 - 0.3
762,934 - -0.3
762,976 + 0.4
763,041 - 0.8
763,050 + -0.0
763,095 - 9623 mRNA_1255 0.11 0.5
763,231 - 9623 mRNA_1255 0.13 -2.0
763,237 + 9623 mRNA_1255 0.14 -0.4
763,240 + 9623 mRNA_1255 0.14 0.4
763,322 - 9623 mRNA_1255 0.15 -0.7
763,359 + 9623 mRNA_1255 0.16 0.2
763,481 - 9623 mRNA_1255 0.18 -0.6
763,563 - 9623 mRNA_1255 0.20 0.1
763,826 - 9623 mRNA_1255 0.25 -2.3
763,834 - 9623 mRNA_1255 0.25 0.2
763,941 - 9623 mRNA_1255 0.27 0.3
764,251 - 9623 mRNA_1255 0.33 0.1
764,343 + 9623 mRNA_1255 0.35 -2.1
764,386 + 9623 mRNA_1255 0.36 -0.2
764,580 + 9623 mRNA_1255 0.40 -0.2
764,633 + 9623 mRNA_1255 0.41 1.4
764,683 - 9623 mRNA_1255 0.42 0.5
764,712 - 9623 mRNA_1255 0.42 1.3
764,857 - 9623 mRNA_1255 0.45 -1.4
764,858 - 9623 mRNA_1255 0.45 -0.8
764,917 + 9623 mRNA_1255 0.46 0.1
764,962 + 9623 mRNA_1255 0.47 -0.7
765,275 - 9623 mRNA_1255 0.53 0.5
765,413 - 9623 mRNA_1255 0.56 0.3
765,434 - 9623 mRNA_1255 0.56 -0.9
765,434 - 9623 mRNA_1255 0.56 0.1
765,509 - 9623 mRNA_1255 0.58 0.1
765,513 + 9623 mRNA_1255 0.58 0.8
765,514 - 9623 mRNA_1255 0.58 -0.5
765,519 - 9623 mRNA_1255 0.58 0.1
765,519 - 9623 mRNA_1255 0.58 -0.1
765,540 + 9623 mRNA_1255 0.58 0.1
765,546 + 9623 mRNA_1255 0.58 2.3
765,613 + 9623 mRNA_1255 0.60 0.4
765,657 + 9623 mRNA_1255 0.61 -1.7
765,681 - 9623 mRNA_1255 0.61 0.5
765,705 - 9623 mRNA_1255 0.62 -0.4
765,803 + 9623 mRNA_1255 0.63 0.3
765,816 - 9623 mRNA_1255 0.64 1.6
765,934 + 9623 mRNA_1255 0.66 0.5
765,984 - 9623 mRNA_1255 0.67 0.6
766,023 - 9623 mRNA_1255 0.68 0.3
766,025 - 9623 mRNA_1255 0.68 0.7
766,154 - 9623 mRNA_1255 0.70 -1.7
766,401 + 9623 mRNA_1255 0.75 0.1
766,461 - 9623 mRNA_1255 0.76 -0.1
766,493 - 9623 mRNA_1255 0.77 -0.7
766,562 - 9623 mRNA_1255 0.78 0.3
766,767 + 9623 mRNA_1255 0.82 -1.1
766,878 + 9623 mRNA_1255 0.84 0.8
766,892 + 9623 mRNA_1255 0.85 0.4
767,011 + 9623 mRNA_1255 0.87 -0.2
767,045 - 9623 mRNA_1255 0.88 1.3
767,126 - 9623 mRNA_1255 0.89 0.2
767,350 - 1.1
767,470 - 0.7
767,726 - 2.4
767,750 + -0.0
767,910 + 2.5
767,914 - 0.2
768,001 + 1.2
768,011 + -1.1
768,383 - 2.3
768,531 - -1.0
768,537 + 2.3
768,631 + 0.1