Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1252

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1251: 9619 - HMMPfam-Protein of unknown function (DUF2611)-PF11022, at 756531 to 757355 9619 mRNA_1252: 9620 - BLAST glycosyltransferase family 22 protein [Mixia osmu..., at 757595 to 759040 9620 mRNA_1253: 9621 - K04554 UBE2J2, NCUBE2, UBC6 ubiquitin-conjugating enzyme E2 J2, at 759440 to 760414 9621

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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756,647 + 9619 mRNA_1251 0.14 -0.0
756,671 + 9619 mRNA_1251 0.17 -0.5
756,786 + 9619 mRNA_1251 0.31 0.8
756,797 + 9619 mRNA_1251 0.32 0.5
757,182 + 9619 mRNA_1251 0.79 0.8
757,183 - 9619 mRNA_1251 0.79 2.7
757,490 + -0.6
757,563 + 1.8
757,647 - 2.8
757,692 - -0.1
757,944 + 9620 mRNA_1252 0.24 -1.3
758,220 - 9620 mRNA_1252 0.43 1.8
758,237 - 9620 mRNA_1252 0.44 0.4
758,362 - 9620 mRNA_1252 0.53 0.3
758,495 - 9620 mRNA_1252 0.62 -0.2
758,536 + 9620 mRNA_1252 0.65 -2.1
758,673 + 9620 mRNA_1252 0.75 0.4
758,800 + 9620 mRNA_1252 0.83 1.6
758,820 - 9620 mRNA_1252 0.85 -0.2
758,971 + -0.6
759,249 - 2.5
759,266 + 1.2
759,273 - 0.1
759,302 - -0.3
759,303 + 0.2
759,303 + 2.2
759,416 - -0.7
759,562 - 9621 mRNA_1253 0.13 1.9
759,567 + 9621 mRNA_1253 0.13 -0.6
759,653 - 9621 mRNA_1253 0.22 0.6
759,842 + 9621 mRNA_1253 0.41 0.5