Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1244

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1243: 9611 - K02493 hemK, prmC, HEMK release factor glutamine methyltransferase, at 738287 to 739305 9611 mRNA_1244: 9612 - SUPERFAMILY--SSF52047, at 739687 to 741319 9612 mRNA_1245: 9613 - HMMPfam-Magnesium transporter NIPA-PF05653,SUPERFAMILY--SSF103481, at 741721 to 743435 9613

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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739,182 + 9611 mRNA_1243 0.88 0.5
739,310 + 0.2
739,455 - 1.4
739,458 - 0.5
739,461 + 1.3
739,480 + 0.3
739,596 - 1.7
739,606 - 0.8
739,609 - 1.5
739,628 - -0.2
739,634 - 1.0
739,635 + 1.0
739,639 + 0.8
739,770 + -1.3
739,771 - 0.8
739,778 + -1.7
739,782 + -0.6
739,914 - 9612 mRNA_1244 0.14 0.6
739,918 - 9612 mRNA_1244 0.14 0.3
739,963 - 9612 mRNA_1244 0.17 0.5
740,346 + 9612 mRNA_1244 0.40 0.9
740,411 - 9612 mRNA_1244 0.44 0.1
740,421 + 9612 mRNA_1244 0.45 0.8
740,555 - 9612 mRNA_1244 0.53 0.2
740,562 + 9612 mRNA_1244 0.54 0.7
740,608 + 9612 mRNA_1244 0.56 0.4
740,635 + 9612 mRNA_1244 0.58 -0.1
740,906 + 9612 mRNA_1244 0.75 0.3
741,093 - 9612 mRNA_1244 0.86 1.1
741,258 + 0.9
741,354 + 1.7
741,529 + -1.3
741,636 - 1.0
741,654 - 1.1
741,660 - 1.2
741,948 - 9613 mRNA_1245 0.13 0.5