Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1243

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1242: 9610 - K01110 PTEN phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, at 736191 to 738180 9610 mRNA_1243: 9611 - K02493 hemK, prmC, HEMK release factor glutamine methyltransferase, at 738287 to 739305 9611 mRNA_1244: 9612 - SUPERFAMILY--SSF52047, at 739687 to 741319 9612

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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737,909 + 9610 mRNA_1242 0.86 2.1
737,973 - 9610 mRNA_1242 0.90 2.3
737,973 - 9610 mRNA_1242 0.90 -1.1
738,159 + -1.1
738,167 - -0.6
738,170 + 0.1
738,508 - 9611 mRNA_1243 0.22 2.1
739,182 + 9611 mRNA_1243 0.88 0.5
739,310 + 0.2
739,455 - 1.4
739,458 - 0.5
739,461 + 1.3
739,480 + 0.3
739,596 - 1.7
739,606 - 0.8
739,609 - 1.5
739,628 - -0.2
739,634 - 1.0
739,635 + 1.0
739,639 + 0.8
739,770 + -1.3
739,771 - 0.8
739,778 + -1.7
739,782 + -0.6
739,914 - 9612 mRNA_1244 0.14 0.6
739,918 - 9612 mRNA_1244 0.14 0.3
739,963 - 9612 mRNA_1244 0.17 0.5