Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1227

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1226: 9594 - K01262 pepP Xaa-Pro aminopeptidase, at 693784 to 696236 9594 mRNA_1227: 9595 - KOG1318 Helix loop helix transcription factor EB, at 696629 to 699042 9595 mRNA_1228: 9596 - K00693 GYS glycogen synthase, at 699587 to 703104 9596

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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695,730 - 9594 mRNA_1226 0.79 2.1
696,201 - 0.5
696,304 + 2.5
696,348 - 2.4
696,602 - 2.0
696,809 + -1.7
696,818 - 0.0
696,940 - 9595 mRNA_1227 0.13 0.8
696,948 + 9595 mRNA_1227 0.13 1.8
696,965 + 9595 mRNA_1227 0.14 3.2
697,024 - 9595 mRNA_1227 0.16 -0.2
697,539 - 9595 mRNA_1227 0.38 -0.3
697,747 + 9595 mRNA_1227 0.46 1.2
698,579 - 9595 mRNA_1227 0.81 1.9
699,044 - 2.3
699,135 + -1.5
699,138 + 1.3
699,169 + 1.4
699,250 - -1.3
699,253 - 0.3
699,262 + -1.5
699,263 + -0.0
699,263 - -0.2
699,278 + -0.6
699,326 - 2.1
699,346 + 0.2
699,356 - -0.1
699,358 - 0.1
699,368 - 1.8
699,377 + -1.0
699,379 + 0.3
699,389 - 0.9
699,409 - 1.6
699,409 + -0.3
699,423 - 1.3
699,423 - -1.2
699,425 - 0.9
699,432 - -1.0
699,449 - 0.8
699,473 + -0.5
699,475 + 1.5
699,476 - -0.6
699,487 + -0.3
699,487 - 0.5
699,502 + -0.6
699,504 + -1.5
699,519 - -2.4
699,520 - 0.8
699,531 - -0.5
699,533 - -1.3
699,534 + -0.9
699,669 + 0.4
699,671 + -0.0
699,677 + 2.1
699,684 + -0.7
699,691 + 1.6
699,698 + 0.3
699,828 + 0.8
699,831 - 0.3
699,831 - -0.7
699,834 - 1.8