Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1225

Experiments: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1224: 9592 - BLAST catalytic [Ascochyta rabiei], at 690092 to 691295 9592 mRNA_1225: 9593 - KOG2195 Transferrin receptor and related proteins containing the protease-associated (PA) domain, at 691442 to 693362 9593 mRNA_1226: 9594 - K01262 pepP Xaa-Pro aminopeptidase, at 693784 to 696236 9594

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
690,457 + 9592 mRNA_1224 0.30 1.3
690,466 - 9592 mRNA_1224 0.31 2.0
690,594 - 9592 mRNA_1224 0.42 1.0
690,760 - 9592 mRNA_1224 0.55 2.2
691,480 + 0.2
691,775 - 9593 mRNA_1225 0.17 1.7
691,821 - 9593 mRNA_1225 0.20 1.2
692,070 + 9593 mRNA_1225 0.33 3.0
692,201 - 9593 mRNA_1225 0.40 -2.4
692,337 + 9593 mRNA_1225 0.47 0.9
692,478 - 9593 mRNA_1225 0.54 0.5
692,502 - 9593 mRNA_1225 0.55 1.4
692,766 - 9593 mRNA_1225 0.69 1.8
693,224 + -0.4
693,390 + 0.7
693,395 - 0.1
693,521 - 0.3
693,523 + 0.3
693,587 + -1.6
693,710 + 0.6
693,815 - 0.1
694,254 - 9594 mRNA_1226 0.19 -1.3
694,281 + 9594 mRNA_1226 0.20 0.4
694,346 + 9594 mRNA_1226 0.23 0.9