Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1194

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1193: 9561 - KOG2504 Monocarboxylate transporter, at 618729 to 620711 9561 mRNA_1194: 9562 - K05925 METTL3_14 mRNA (2'-O-methyladenosine-N6-)-methyltransferase, at 621153 to 623607 9562 mRNA_1195: 9563 - K03248 EIF3G translation initiation factor 3 subunit G, at 624077 to 625434 9563

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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620,167 - 9561 mRNA_1193 0.73 -0.8
620,190 + 9561 mRNA_1193 0.74 0.1
620,190 + 9561 mRNA_1193 0.74 -1.3
620,191 - 9561 mRNA_1193 0.74 -2.8
620,254 - 9561 mRNA_1193 0.77 0.0
620,450 - 9561 mRNA_1193 0.87 1.7
620,542 + 0.6
620,584 - 0.7
620,724 - 1.7
620,875 + -2.6
620,885 + 2.3
621,036 + -0.1
621,055 - 0.1
621,057 + 0.2
621,163 - 1.8
621,192 + -0.5
621,305 + -1.0
621,397 + -0.2
621,398 + 1.4
621,695 - 9562 mRNA_1194 0.22 0.3
621,735 + 9562 mRNA_1194 0.24 0.3
621,745 + 9562 mRNA_1194 0.24 -2.5
621,749 + 9562 mRNA_1194 0.24 -0.3
621,781 + 9562 mRNA_1194 0.26 0.2
621,788 + 9562 mRNA_1194 0.26 0.3
621,907 - 9562 mRNA_1194 0.31 -0.5
621,984 - 9562 mRNA_1194 0.34 0.6
621,984 - 9562 mRNA_1194 0.34 0.9
622,015 + 9562 mRNA_1194 0.35 1.4
622,048 - 9562 mRNA_1194 0.36 -1.2
622,497 + 9562 mRNA_1194 0.55 -1.6
622,564 - 9562 mRNA_1194 0.57 -2.3
622,598 - 9562 mRNA_1194 0.59 0.4
622,789 - 9562 mRNA_1194 0.67 0.1
622,792 + 9562 mRNA_1194 0.67 0.8
622,933 + 9562 mRNA_1194 0.73 0.9
623,205 - 9562 mRNA_1194 0.84 -0.2
623,211 - 9562 mRNA_1194 0.84 1.6
623,643 - -0.1
623,644 - 0.3
623,647 - -2.4
623,672 + 0.1
623,791 + 0.8
623,851 + 0.5
623,854 + 0.6
624,089 - -0.7