Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1192

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1191: 9559 - KOG3033 Predicted PhzC/PhzF-type epimerase, at 615062 to 616261 9559 mRNA_1192: 9560 - KOG2504 Monocarboxylate transporter, at 616392 to 618414 9560 mRNA_1193: 9561 - KOG2504 Monocarboxylate transporter, at 618729 to 620711 9561

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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615,405 - 9559 mRNA_1191 0.29 1.1
615,405 - 9559 mRNA_1191 0.29 -0.4
615,409 - 9559 mRNA_1191 0.29 1.7
615,486 + 9559 mRNA_1191 0.35 -0.2
615,577 - 9559 mRNA_1191 0.43 0.8
615,708 - 9559 mRNA_1191 0.54 -0.7
615,718 + 9559 mRNA_1191 0.55 3.3
615,754 + 9559 mRNA_1191 0.58 1.8
616,021 - 9559 mRNA_1191 0.80 0.4
616,056 - 9559 mRNA_1191 0.83 0.9
616,129 - 9559 mRNA_1191 0.89 -1.1
616,130 + 9559 mRNA_1191 0.89 1.6
616,130 + 9559 mRNA_1191 0.89 -1.2
616,144 - 0.3
616,153 + -0.4
616,283 + 1.1
616,305 - -0.8
616,405 + 1.0
616,597 - 9560 mRNA_1192 0.10 1.0
616,608 + 9560 mRNA_1192 0.11 0.6
616,618 + 9560 mRNA_1192 0.11 -0.1
616,730 + 9560 mRNA_1192 0.17 0.7
616,731 + 9560 mRNA_1192 0.17 1.3
616,735 + 9560 mRNA_1192 0.17 4.2
616,844 - 9560 mRNA_1192 0.22 0.7
616,888 - 9560 mRNA_1192 0.25 0.5
616,898 + 9560 mRNA_1192 0.25 -2.3
616,992 - 9560 mRNA_1192 0.30 0.4
617,014 - 9560 mRNA_1192 0.31 2.6
617,171 + 9560 mRNA_1192 0.39 1.9
617,632 - 9560 mRNA_1192 0.61 -1.0
617,647 + 9560 mRNA_1192 0.62 0.0
617,921 - 9560 mRNA_1192 0.76 -0.4
617,953 + 9560 mRNA_1192 0.77 0.7
618,052 + 9560 mRNA_1192 0.82 0.6
618,052 - 9560 mRNA_1192 0.82 -0.3
618,192 - 9560 mRNA_1192 0.89 2.2
618,229 - -0.8
618,229 + 0.0
618,244 + 0.0
618,371 + 0.0
618,381 + 0.8
618,405 + 0.3
618,416 - -1.4
618,417 + 2.2
618,418 + 2.1
618,418 + 1.4
618,418 + -0.4
618,418 + -0.4
618,418 + 1.9
618,419 + 0.0
618,419 + 0.1
618,425 + -1.4
618,530 + 2.2
618,536 + 2.1
618,576 + 0.7
618,627 - -0.3
618,638 - 2.3
618,641 - -0.6
618,667 + 1.9
618,681 - -1.1
618,710 + 1.1
618,713 - 1.0
618,773 + 1.4
618,931 - 9561 mRNA_1193 0.10 0.5
619,053 + 9561 mRNA_1193 0.16 1.0
619,270 + 9561 mRNA_1193 0.27 -0.2