Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1180

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1179: 9547 - K12611 DCP1B mRNA-decapping enzyme 1B, at 584015 to 586277 9547 mRNA_1180: 9548 - Hypothetical Protein, at 587058 to 592378 9548 mRNA_1181: 9549 - Hypothetical Protein, at 592662 to 593327 9549

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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586,158 - -2.3
586,314 + 0.9
586,447 - 1.1
586,560 - -0.8
586,715 - 0.5
586,741 + -0.5
586,838 + -2.6
586,842 + -0.4
586,899 - -2.0
586,946 - -0.2
587,608 - 9548 mRNA_1180 0.10 0.6
587,927 + 9548 mRNA_1180 0.16 1.8
588,040 - 9548 mRNA_1180 0.18 1.0
588,045 + 9548 mRNA_1180 0.19 0.0
588,064 - 9548 mRNA_1180 0.19 0.2
588,177 + 9548 mRNA_1180 0.21 -1.7
588,319 - 9548 mRNA_1180 0.24 0.1
588,620 + 9548 mRNA_1180 0.29 1.5
588,868 + 9548 mRNA_1180 0.34 -0.1
588,898 + 9548 mRNA_1180 0.35 2.0
589,038 - 9548 mRNA_1180 0.37 1.9
589,062 - 9548 mRNA_1180 0.38 -0.7
589,072 + 9548 mRNA_1180 0.38 0.0
589,184 - 9548 mRNA_1180 0.40 1.0
589,213 + 9548 mRNA_1180 0.40 -0.1
589,253 + 9548 mRNA_1180 0.41 0.6
589,330 - 9548 mRNA_1180 0.43 0.2
589,436 - 9548 mRNA_1180 0.45 -0.6
589,468 - 9548 mRNA_1180 0.45 -0.3
589,478 + 9548 mRNA_1180 0.45 1.5
589,613 + 9548 mRNA_1180 0.48 -0.3
589,766 - 9548 mRNA_1180 0.51 1.5
589,805 + 9548 mRNA_1180 0.52 0.7
589,805 + 9548 mRNA_1180 0.52 -0.1
589,903 - 9548 mRNA_1180 0.53 -0.0
589,910 + 9548 mRNA_1180 0.54 0.7
590,080 + 9548 mRNA_1180 0.57 -0.6
590,299 - 9548 mRNA_1180 0.61 -0.8
590,349 - 9548 mRNA_1180 0.62 0.1
590,668 + 9548 mRNA_1180 0.68 1.3
590,805 - 9548 mRNA_1180 0.70 -0.3
591,012 + 9548 mRNA_1180 0.74 -2.3
591,201 + 9548 mRNA_1180 0.78 -0.2
591,661 - 9548 mRNA_1180 0.87 1.2
591,715 - 9548 mRNA_1180 0.88 0.5
591,791 + 9548 mRNA_1180 0.89 1.5
591,922 - -0.2
591,923 + 1.0
591,934 - 0.5
592,120 + 1.8
592,121 + 0.3
592,124 - 0.7
592,209 + -0.5
592,228 + 0.3
592,284 + 0.4
592,287 - 0.1
592,289 + 1.7
592,653 + 1.5
592,702 - 1.3
592,835 - 9549 mRNA_1181 0.26 0.5
593,119 - 9549 mRNA_1181 0.69 -3.0
593,361 + -1.1