Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1173

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1172: 9540 - KOG2277 S-M checkpoint control protein CID1 and related nucleotidyltransferases, at 571334 to 573898 9540 mRNA_1173: 9541 - Hypothetical Protein, at 574105 to 575221 9541 mRNA_1174: 9542 - K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme, at 575723 to 577057 9542

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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573,206 + 9540 mRNA_1172 0.73 0.4
573,262 - 9540 mRNA_1172 0.75 -0.2
573,325 - 9540 mRNA_1172 0.78 0.5
573,385 + 9540 mRNA_1172 0.80 0.4
573,502 + 9540 mRNA_1172 0.85 1.2
573,546 + 9540 mRNA_1172 0.86 1.2
573,865 + 1.7
573,919 + -0.3
573,927 + 0.2
573,929 - 0.7
574,023 + 0.8
574,242 + 9541 mRNA_1173 0.12 -0.6
574,256 - 9541 mRNA_1173 0.14 0.7
574,303 + 9541 mRNA_1173 0.18 -1.3
574,314 - 9541 mRNA_1173 0.19 -0.7
574,406 + 9541 mRNA_1173 0.27 0.7
574,457 - 9541 mRNA_1173 0.32 0.6
574,465 + 9541 mRNA_1173 0.32 -0.6
574,482 + 9541 mRNA_1173 0.34 1.1
574,491 - 9541 mRNA_1173 0.35 -1.1
574,541 - 9541 mRNA_1173 0.39 0.2
574,594 + 9541 mRNA_1173 0.44 -1.2
574,616 - 9541 mRNA_1173 0.46 -0.3
574,643 - 9541 mRNA_1173 0.48 0.5
574,652 + 9541 mRNA_1173 0.49 -0.1
574,656 + 9541 mRNA_1173 0.49 0.1
574,673 - 9541 mRNA_1173 0.51 -1.0
574,816 + 9541 mRNA_1173 0.64 0.0
574,822 + 9541 mRNA_1173 0.64 0.5
574,822 + 9541 mRNA_1173 0.64 -0.2
574,834 + 9541 mRNA_1173 0.65 1.5
574,854 - 9541 mRNA_1173 0.67 1.0
574,956 - 9541 mRNA_1173 0.76 0.2
575,087 + 9541 mRNA_1173 0.88 0.6
575,153 - -1.5
575,203 + -0.4
575,221 + -1.5
575,245 + 0.6
575,388 + -0.3
575,403 + 2.3
575,546 + -0.1
575,673 + 1.7
575,685 - -0.6
575,685 - 0.8
575,688 + 0.2
575,805 - -0.7
575,824 + 0.5
575,967 + 9542 mRNA_1174 0.18 0.2
575,973 - 9542 mRNA_1174 0.19 0.8
576,172 - 9542 mRNA_1174 0.34 0.4
576,184 + 9542 mRNA_1174 0.35 1.0