Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1172

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1171: 9539 - K07277 SAM50, TOB55, bamA outer membrane protein insertion porin family, at 568552 to 570961 9539 mRNA_1172: 9540 - KOG2277 S-M checkpoint control protein CID1 and related nucleotidyltransferases, at 571334 to 573898 9540 mRNA_1173: 9541 - Hypothetical Protein, at 574105 to 575221 9541

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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571,045 + -0.4
571,064 - 0.1
571,131 - 1.0
571,134 + -0.3
571,164 - -0.4
571,168 - -1.6
571,170 + 0.5
571,174 + 2.6
571,202 - 0.3
571,311 + 0.9
571,322 - 0.7
571,621 + 9540 mRNA_1172 0.11 0.7
571,646 + 9540 mRNA_1172 0.12 0.5
571,931 - 9540 mRNA_1172 0.23 -0.2
571,932 + 9540 mRNA_1172 0.23 0.9
571,934 - 9540 mRNA_1172 0.23 1.4
572,227 - 9540 mRNA_1172 0.35 0.9
572,372 - 9540 mRNA_1172 0.40 0.4
572,377 + 9540 mRNA_1172 0.41 -0.0
572,509 + 9540 mRNA_1172 0.46 1.7
572,517 - 9540 mRNA_1172 0.46 1.9
572,692 + 9540 mRNA_1172 0.53 0.3
573,206 + 9540 mRNA_1172 0.73 0.4
573,262 - 9540 mRNA_1172 0.75 -0.2
573,325 - 9540 mRNA_1172 0.78 0.5
573,385 + 9540 mRNA_1172 0.80 0.4
573,502 + 9540 mRNA_1172 0.85 1.2
573,546 + 9540 mRNA_1172 0.86 1.2
573,865 + 1.7
573,919 + -0.3
573,927 + 0.2
573,929 - 0.7
574,023 + 0.8
574,242 + 9541 mRNA_1173 0.12 -0.6
574,256 - 9541 mRNA_1173 0.14 0.7
574,303 + 9541 mRNA_1173 0.18 -1.3
574,314 - 9541 mRNA_1173 0.19 -0.7
574,406 + 9541 mRNA_1173 0.27 0.7
574,457 - 9541 mRNA_1173 0.32 0.6
574,465 + 9541 mRNA_1173 0.32 -0.6
574,482 + 9541 mRNA_1173 0.34 1.1
574,491 - 9541 mRNA_1173 0.35 -1.1
574,541 - 9541 mRNA_1173 0.39 0.2
574,594 + 9541 mRNA_1173 0.44 -1.2
574,616 - 9541 mRNA_1173 0.46 -0.3
574,643 - 9541 mRNA_1173 0.48 0.5
574,652 + 9541 mRNA_1173 0.49 -0.1
574,656 + 9541 mRNA_1173 0.49 0.1
574,673 - 9541 mRNA_1173 0.51 -1.0
574,816 + 9541 mRNA_1173 0.64 0.0
574,822 + 9541 mRNA_1173 0.64 0.5
574,822 + 9541 mRNA_1173 0.64 -0.2
574,834 + 9541 mRNA_1173 0.65 1.5
574,854 - 9541 mRNA_1173 0.67 1.0