Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1165

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1164: 9532 - Hypothetical Protein, at 552710 to 552960 9532 mRNA_1165: 9533 - HMMPfam-Protein of unknown function (DUF1445)-PF07286,PIRSF--PIRSF029755,SUPERFAMILY--SSF160920, at 553391 to 554372 9533 mRNA_1166: 9534 - KOG2533 Permease of the major facilitator superfamily, at 554788 to 557060 9534

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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552,650 + -0.8
552,697 - 0.5
552,701 + 1.0
552,761 + 9532 mRNA_1164 0.20 0.2
552,777 - 9532 mRNA_1164 0.27 2.2
552,788 - 9532 mRNA_1164 0.31 -0.2
552,789 - 9532 mRNA_1164 0.31 0.1
552,824 + 9532 mRNA_1164 0.45 -0.1
552,848 - 9532 mRNA_1164 0.55 0.8
552,853 + 9532 mRNA_1164 0.57 2.2
553,116 - -0.3
553,137 - 2.8
553,157 + -0.3
553,161 + -0.1
553,270 + 0.4
553,272 - 0.0
553,435 - -1.3
553,528 - 9533 mRNA_1165 0.14 1.5
553,595 - 9533 mRNA_1165 0.21 1.0
553,726 + 9533 mRNA_1165 0.34 -2.2
553,732 - 9533 mRNA_1165 0.35 0.0
554,014 - 9533 mRNA_1165 0.63 -0.4
554,023 - 9533 mRNA_1165 0.64 1.3
554,278 - 0.2
554,286 + 3.5
554,351 + -0.6
554,544 + 1.7
554,563 - 1.5
554,625 - -0.7
554,710 - 0.7
555,124 + 9534 mRNA_1166 0.15 -0.1
555,178 + 9534 mRNA_1166 0.17 0.8
555,341 + 9534 mRNA_1166 0.24 0.3
555,344 - 9534 mRNA_1166 0.24 -1.2