Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1162

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1161: 9529 - K03028 PSMD2, RPN1 26S proteasome regulatory subunit N1, at 543983 to 547395 9529 mRNA_1162: 9530 - SUPERFAMILY--SSF52047, at 547799 to 548923 9530 mRNA_1163: 9531 - KOG1378 Purple acid phosphatase, at 549366 to 551873 9531

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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547,492 + 1.2
547,499 + 1.3
547,535 + -0.5
547,638 + 0.9
547,679 + -1.8
547,791 - 0.5
547,935 + 9530 mRNA_1162 0.12 0.4
548,130 - 9530 mRNA_1162 0.29 1.0
548,353 + 9530 mRNA_1162 0.49 -0.5
548,640 - 9530 mRNA_1162 0.75 0.1
548,649 + 9530 mRNA_1162 0.76 0.0
548,931 + 0.1
548,953 - 0.0
548,960 + 0.2
548,977 + -1.0
549,107 - -0.9
549,116 - 2.0
549,130 + -2.0
549,132 + 3.4
549,245 + -1.7
549,273 + -0.1
549,276 - -0.5
549,295 + 0.9
549,445 + 0.5
549,548 + 0.7
549,581 - 0.9
549,737 + 9531 mRNA_1163 0.15 0.7
549,737 + 9531 mRNA_1163 0.15 -0.4
549,855 + 9531 mRNA_1163 0.19 -1.0