Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1158

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1157: 9525 - K14818 SQT1 ribosome assembly protein SQT1, at 531850 to 533484 9525 mRNA_1158: 9526 - Hypothetical Protein, at 533999 to 537881 9526 mRNA_1159: 9527 - HMMPfam-Archaeal ATPase-PF01637,SUPERFAMILY--SSF52540, at 538557 to 540883 9527

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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533,518 - -1.6
533,556 + 0.4
533,635 - 0.1
533,644 + -1.1
533,667 - 0.8
533,673 + 0.8
533,674 + -1.4
533,681 + -1.0
533,688 + 0.2
533,818 - -0.9
533,818 - -0.2
533,825 + 2.3
533,916 - 1.2
534,120 + 0.1
534,123 - 3.2
534,127 - 0.0
534,133 + 0.8
534,136 + 0.6
534,146 + 0.2
534,148 - 1.3
534,286 + 0.4
534,416 + 9526 mRNA_1158 0.11 0.0
534,419 - 9526 mRNA_1158 0.11 -0.4
534,879 + 9526 mRNA_1158 0.23 0.4
535,273 - 9526 mRNA_1158 0.33 2.0
535,280 + 9526 mRNA_1158 0.33 2.6
535,426 + 9526 mRNA_1158 0.37 -0.3
535,753 + 9526 mRNA_1158 0.45 -1.2
536,451 + 9526 mRNA_1158 0.63 1.5
536,651 + 9526 mRNA_1158 0.68 1.8
536,752 + 9526 mRNA_1158 0.71 0.5
537,225 + 9526 mRNA_1158 0.83 2.0
537,324 + 9526 mRNA_1158 0.86 1.3
537,465 - 9526 mRNA_1158 0.89 0.6
537,481 - 9526 mRNA_1158 0.90 -0.1
537,757 + -0.8
537,854 - 0.7
537,894 - -0.2
538,038 + -0.2
538,041 + 1.7
538,297 + 0.1
538,306 + 0.1
538,337 - 3.0
538,499 + -0.3
538,513 - -0.0
538,513 - -1.3
538,516 - -0.0
538,646 - -0.0
538,661 - 0.5
538,668 + 1.3
538,668 + -1.4