Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1149

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1148: 9516 - K02923 RP-L38e, RPL38 large subunit ribosomal protein L38e, at 517716 to 518527 9516 mRNA_1149: 9517 - Hypothetical Protein, at 519229 to 520018 9517 mRNA_1150: 9518 - Hypothetical Protein, at 520283 to 520867 9518

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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518,576 + 0.7
518,582 + 1.0
518,663 - -0.1
518,750 + -0.2
518,869 - 0.0
519,169 - 0.5
519,278 - 0.4
519,441 + 9517 mRNA_1149 0.27 -1.7
519,482 - 9517 mRNA_1149 0.32 0.1
519,621 + 9517 mRNA_1149 0.50 -0.4
519,859 - 9517 mRNA_1149 0.80 -0.4
519,890 - 9517 mRNA_1149 0.84 1.3
520,185 + -0.7
520,296 - 1.1
520,489 + 9518 mRNA_1150 0.35 0.4
520,503 - 9518 mRNA_1150 0.38 1.5
520,512 - 9518 mRNA_1150 0.39 -0.2
520,783 + 9518 mRNA_1150 0.85 -1.7
520,787 + 9518 mRNA_1150 0.86 0.5
520,804 + 9518 mRNA_1150 0.89 0.3
520,831 + -0.5
520,846 + -0.5
520,902 + 1.7
520,958 - 0.1