Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1141

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1140: 9508 - Hypothetical Protein, at 501144 to 502364 9508 mRNA_1141: 9509 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 502606 to 503454 9509 mRNA_1142: 9510 - K03139 TFIIF2, GTF2F2, TFG2 transcription initiation factor TFIIF subunit beta, at 503587 to 505304 9510

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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501,645 + 9508 mRNA_1140 0.41 -0.8
501,657 - 9508 mRNA_1140 0.42 2.9
501,665 + 9508 mRNA_1140 0.43 2.2
501,711 - 9508 mRNA_1140 0.46 1.0
501,725 + 9508 mRNA_1140 0.48 0.5
501,819 + 9508 mRNA_1140 0.55 1.4
501,830 - 9508 mRNA_1140 0.56 1.3
501,948 - 9508 mRNA_1140 0.66 1.3
501,979 - 9508 mRNA_1140 0.68 1.9
501,980 - 9508 mRNA_1140 0.68 -1.1
502,126 + 9508 mRNA_1140 0.80 -0.5
502,134 - 9508 mRNA_1140 0.81 0.9
502,139 + 9508 mRNA_1140 0.81 0.9
502,238 - 9508 mRNA_1140 0.90 0.6
502,239 - 9508 mRNA_1140 0.90 0.5
502,243 - -0.0
502,398 + 1.1
502,400 - 1.6
502,407 + 0.2
502,420 - -0.0
502,424 + -0.5
502,424 + 2.7
502,425 - -1.8
502,431 + 2.6
502,435 - -0.6
502,440 + 0.6
502,446 + -0.3
502,726 - 9509 mRNA_1141 0.14 0.3
503,043 + 9509 mRNA_1141 0.51 0.0
503,286 - 9509 mRNA_1141 0.80 1.1
503,429 - -0.6
504,146 + 9510 mRNA_1142 0.33 0.4