Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1139

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1138: 9506 - K12598 MTR4, SKIV2L2 ATP-dependent RNA helicase DOB1, at 495296 to 498898 9506 mRNA_1139: 9507 - KOG0948 Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily, at 499455 to 501152 9507 mRNA_1140: 9508 - Hypothetical Protein, at 501144 to 502364 9508

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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498,904 + 0.8
498,905 - 1.8
499,015 - 0.7
499,031 + -0.4
499,042 + 0.0
499,058 - -1.2
499,059 - -0.7
499,063 + 0.5
499,090 + -0.1
499,169 - -0.2
499,182 + -0.1
499,276 + 1.2
499,377 + 0.1
499,503 - 1.1
499,504 - 0.6
499,523 + 0.0
499,795 - 9507 mRNA_1139 0.20 1.8
500,526 + 9507 mRNA_1139 0.63 2.5
500,934 - 9507 mRNA_1139 0.87 1.3
501,104 + 1.1
501,115 + 1.5
501,514 + 9508 mRNA_1140 0.30 -1.2
501,645 + 9508 mRNA_1140 0.41 -0.8
501,657 - 9508 mRNA_1140 0.42 2.9
501,665 + 9508 mRNA_1140 0.43 2.2
501,711 - 9508 mRNA_1140 0.46 1.0
501,725 + 9508 mRNA_1140 0.48 0.5
501,819 + 9508 mRNA_1140 0.55 1.4
501,830 - 9508 mRNA_1140 0.56 1.3
501,948 - 9508 mRNA_1140 0.66 1.3
501,979 - 9508 mRNA_1140 0.68 1.9
501,980 - 9508 mRNA_1140 0.68 -1.1
502,126 + 9508 mRNA_1140 0.80 -0.5
502,134 - 9508 mRNA_1140 0.81 0.9
502,139 + 9508 mRNA_1140 0.81 0.9