Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1129

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1128: 9496 - Interpro Arrestin (or S-antigen), N-terminal domain 0, at 471353 to 475855 9496 mRNA_1129: 9497 - K12391 AP1G1 AP-1 complex subunit gamma-1, at 476023 to 479289 9497 mRNA_1130: 9498 - KOG1773 Stress responsive protein, at 479991 to 480650 9498

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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475,057 + 9496 mRNA_1128 0.82 0.8
475,127 - 9496 mRNA_1128 0.84 -0.9
475,402 + 9496 mRNA_1128 0.90 -0.1
475,680 + 1.4
475,815 - -0.1
475,862 + 0.5
476,143 - 0.5
476,356 + 9497 mRNA_1129 0.10 1.0
476,754 - 9497 mRNA_1129 0.22 0.3
479,372 - -1.2
479,375 - -0.9
479,378 - 0.7
479,381 + -0.8
479,400 - -0.8
479,402 + 1.0
479,402 - -0.4
479,671 - 1.5
479,678 + 2.5
479,703 + 0.0
479,780 + 0.4
479,806 - 0.3
479,979 - 0.2
480,237 - 9498 mRNA_1130 0.37 -1.3