Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1126

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1125: 9493 - K20465 OSBPL9_10_11, ORP9_10_11 oxysterol-binding protein-related protein 9/10/11, at 460316 to 462771 9493 mRNA_1126: 9494 - K15334 NCL1, TRM4 multisite-specific tRNA-(cytosine-C5)-methyltransferase, at 463118 to 466210 9494 mRNA_1127: 9495 - K00143 LYS2 L-aminoadipate-semialdehyde dehydrogenase, at 466494 to 471179 9495

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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462,296 + 9493 mRNA_1125 0.81 1.2
462,310 - 9493 mRNA_1125 0.81 1.7
462,313 + 9493 mRNA_1125 0.81 1.2
462,422 + 9493 mRNA_1125 0.86 -1.5
462,428 + 9493 mRNA_1125 0.86 1.4
462,444 + 9493 mRNA_1125 0.87 0.7
462,574 + 0.1
462,741 + -0.8
462,902 + -0.2
462,906 + -0.1
463,049 - 2.5
463,138 + -0.1
463,281 - -0.7
463,290 + 0.8
463,343 - 0.3
463,723 + 9494 mRNA_1126 0.20 -0.3
464,133 - 9494 mRNA_1126 0.33 3.2
464,252 - 9494 mRNA_1126 0.37 -2.3
465,236 - 9494 mRNA_1126 0.68 -1.0
465,244 - 9494 mRNA_1126 0.69 -0.4
465,853 + 9494 mRNA_1126 0.88 0.4
466,275 - -1.9
466,276 + 2.1
466,280 + -0.7
466,284 + 0.8
466,285 + -0.5
466,286 - -1.1
466,286 + 0.6
466,286 - 0.2
466,359 + -0.4
466,359 - 0.2
466,362 + 1.7
466,362 - -1.0
466,362 + -1.1
466,368 - 0.8
466,370 - -0.4
466,371 - 0.7
466,373 + -0.6
466,374 - 0.2
466,387 + -0.3
466,392 + 1.8
466,412 + -0.6
466,422 - 0.7
466,819 - -0.0
466,933 + -2.5
466,951 - 0.4
466,965 + 9495 mRNA_1127 0.10 1.8