Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1121

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1120: 9488 - KOG1612 Exosomal 3'-5' exoribonuclease complex, subunit Rrp42, at 448801 to 450033 9488 mRNA_1121: 9489 - K05389 KCNKF potassium channel subfamily K, other eukaryote, at 450183 to 453173 9489 mRNA_1122: 9490 - BLAST glycoside hydrolase family 28 protein [Tulasnella cal..., at 453460 to 456260 9490

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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449,275 - 9488 mRNA_1120 0.38 0.8
450,208 - 0.1
450,394 - -0.0
450,476 + 1.2
450,627 + 9489 mRNA_1121 0.15 -3.2
450,667 - 9489 mRNA_1121 0.16 -0.3
451,224 - 9489 mRNA_1121 0.35 -0.3
451,308 + 9489 mRNA_1121 0.38 2.0
451,463 - 9489 mRNA_1121 0.43 0.8
452,061 - 9489 mRNA_1121 0.63 0.2
452,140 + 9489 mRNA_1121 0.65 0.9
452,255 + 9489 mRNA_1121 0.69 2.9
452,812 - 9489 mRNA_1121 0.88 0.9
453,074 - -0.1
453,082 + 1.2
453,113 - 1.3
453,228 + -0.3
453,243 - 0.1
453,244 + 0.1
453,250 + 1.2
453,252 + 2.7
453,366 + -1.1
453,367 - 3.2
453,368 + -0.2
453,368 - 0.3
453,372 - -1.7
453,372 + 0.2
453,373 + 0.8
453,375 + 0.8
453,375 + -0.4
453,377 - 1.3
453,378 + -0.5
453,378 - -2.4
453,384 + -1.1
453,391 + 1.8
453,411 + -1.1
453,548 + 1.1
453,600 + 1.3
453,649 + 0.0
453,667 - 1.2
453,814 - 9490 mRNA_1122 0.13 0.6
453,816 + 9490 mRNA_1122 0.13 -0.2
453,819 - 9490 mRNA_1122 0.13 0.4
453,822 - 9490 mRNA_1122 0.13 -0.2
453,829 + 9490 mRNA_1122 0.13 -0.7
453,833 - 9490 mRNA_1122 0.13 0.8
453,836 + 9490 mRNA_1122 0.13 0.2
453,968 - 9490 mRNA_1122 0.18 -1.8
453,973 - 9490 mRNA_1122 0.18 0.7
453,979 + 9490 mRNA_1122 0.19 -0.3
453,999 + 9490 mRNA_1122 0.19 0.5
454,007 + 9490 mRNA_1122 0.20 1.9
454,014 + 9490 mRNA_1122 0.20 -0.8
454,016 - 9490 mRNA_1122 0.20 1.2
454,027 - 9490 mRNA_1122 0.20 2.5
454,032 + 9490 mRNA_1122 0.20 -1.7
454,083 - 9490 mRNA_1122 0.22 0.3