Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1118

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1117: 9485 - K13102 KIN DNA/RNA-binding protein KIN17, at 443661 to 444962 9485 mRNA_1118: 9486 - HMMPfam-RTA1 like protein-PF04479, at 445419 to 446946 9486 mRNA_1119: 9487 - Hypothetical Protein, at 447624 to 448229 9487

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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444,967 + -0.6
444,971 - 0.5
445,170 - -0.2
445,175 - -0.9
445,307 - 1.1
445,457 + -1.4
446,055 + 9486 mRNA_1118 0.42 -1.3
446,204 + 9486 mRNA_1118 0.51 2.4
446,221 - 9486 mRNA_1118 0.52 2.1
446,448 + 9486 mRNA_1118 0.67 0.3
446,640 + 9486 mRNA_1118 0.80 2.2
446,653 + 9486 mRNA_1118 0.81 0.8
446,805 - 2.3
446,859 - 0.1
446,875 + 0.6
446,876 - -0.5
446,903 + -1.7
446,921 + 0.8
446,922 + 0.1
446,941 - 1.0
447,029 + 0.3
447,044 + 1.0
447,084 - -0.7
447,090 - 1.1
447,116 - 0.3
447,117 + -0.0
447,134 - 0.8
447,150 + 1.7
447,167 - -1.1
447,196 - 0.0
447,198 - 0.0
447,200 + 1.3
447,204 - 1.6
447,214 + 0.0
447,232 + 0.8
447,237 - 1.7
447,237 - -2.4
447,237 - 0.8
447,238 - 0.1
447,238 - 0.4
447,240 + 1.4
447,242 - 2.0
447,242 - -1.3
447,242 + 1.3
447,242 - -0.8
447,244 - 0.6
447,255 - 0.2
447,270 + 0.9
447,270 + -0.6
447,273 + 0.2
447,280 - 1.3
447,282 + -0.2
447,286 - 0.2
447,289 - -0.8
447,306 - -0.2
447,307 - -0.4
447,321 + -1.8
447,321 + -0.0
447,321 + -1.2
447,322 - 1.1
447,328 - 0.1
447,345 + 0.0
447,421 + 0.6
447,424 + 1.9
447,437 - -1.2
447,447 + -0.6
447,578 - 0.3
447,580 + -0.3
447,608 + -0.6
447,715 + 9487 mRNA_1119 0.15 -1.7
447,835 + 9487 mRNA_1119 0.35 0.3
447,872 + 9487 mRNA_1119 0.41 0.8
447,914 + 9487 mRNA_1119 0.48 0.5