Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1114

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1113: 9481 - HMMPfam-Protein of unknown function (DUF3602)-PF12223, at 434481 to 435131 9481 mRNA_1114: 9482 - KOG1396 Uncharacterized conserved protein, at 435382 to 439006 9482 mRNA_1115: 9483 - SUPERFAMILY--SSF52047, at 439344 to 441081 9483

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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434,407 - 0.7
434,419 - 2.5
434,447 + -0.5
434,454 + 0.6
434,459 + -0.4
434,621 - 9481 mRNA_1113 0.22 1.2
434,623 - 9481 mRNA_1113 0.22 1.0
434,769 + 9481 mRNA_1113 0.44 0.5
435,044 + 9481 mRNA_1113 0.86 -0.3
435,518 + 1.1
435,725 - -2.0
435,900 - 9482 mRNA_1114 0.14 2.1
436,216 - 9482 mRNA_1114 0.23 -0.1
436,297 - 9482 mRNA_1114 0.25 1.0
436,381 + 9482 mRNA_1114 0.28 0.1
436,385 + 9482 mRNA_1114 0.28 -1.1
436,493 - 9482 mRNA_1114 0.31 3.1
438,544 + 9482 mRNA_1114 0.87 -0.1
438,578 + 9482 mRNA_1114 0.88 0.9
439,143 - 1.0
439,209 - 2.1
439,302 - -0.7
439,304 - -1.9
439,311 + -0.1
439,319 + -1.1
439,324 + -0.9
439,605 + 9483 mRNA_1115 0.15 -3.2