Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1112

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1111: 9479 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 430146 to 432940 9479 mRNA_1112: 9480 - Interpro Protein of unknown function (DUF3602) Protein of unknown function (DUF3602) 0, at 433263 to 434310 9480 mRNA_1113: 9481 - HMMPfam-Protein of unknown function (DUF3602)-PF12223, at 434481 to 435131 9481

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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432,353 + 9479 mRNA_1111 0.79 -1.0
432,636 - 9479 mRNA_1111 0.89 -1.2
432,689 - -0.8
432,794 + 1.7
432,813 + 0.4
432,948 + -1.3
433,092 - 0.0
433,096 - -0.1
433,252 - -0.9
433,267 + 0.9
433,267 - -0.2
433,381 - 9480 mRNA_1112 0.11 -1.2
433,388 - 9480 mRNA_1112 0.12 0.4
433,399 + 9480 mRNA_1112 0.13 0.2
433,401 + 9480 mRNA_1112 0.13 -1.1
433,406 + 9480 mRNA_1112 0.14 0.8
433,413 + 9480 mRNA_1112 0.14 2.8
433,492 - 9480 mRNA_1112 0.22 -1.2
433,537 + 9480 mRNA_1112 0.26 0.7
433,541 - 9480 mRNA_1112 0.27 -0.6
433,687 + 9480 mRNA_1112 0.40 0.0
433,688 - 9480 mRNA_1112 0.41 -1.2
433,697 + 9480 mRNA_1112 0.41 0.7
433,705 - 9480 mRNA_1112 0.42 0.1
434,118 - 9480 mRNA_1112 0.82 2.1
434,238 + 0.4
434,407 - 0.7
434,419 - 2.5
434,447 + -0.5
434,454 + 0.6
434,459 + -0.4
434,621 - 9481 mRNA_1113 0.22 1.2
434,623 - 9481 mRNA_1113 0.22 1.0
434,769 + 9481 mRNA_1113 0.44 0.5
435,044 + 9481 mRNA_1113 0.86 -0.3