Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1110

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1109: 9477 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 426954 to 427895 9477 mRNA_1110: 9478 - Hypothetical Protein, at 428517 to 429913 9478 mRNA_1111: 9479 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 430146 to 432940 9479

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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427,559 + 9477 mRNA_1109 0.64 3.1
427,559 + 9477 mRNA_1109 0.64 -0.2
427,605 - 9477 mRNA_1109 0.69 1.1
427,750 - 9477 mRNA_1109 0.85 0.9
427,758 + 9477 mRNA_1109 0.85 0.4
427,866 + 1.8
427,892 - 0.2
427,899 + 2.0
427,899 + -1.6
427,989 - -1.8
428,080 + -0.4
428,242 + 0.6
428,486 - 2.0
428,502 - -1.1
428,657 + 9478 mRNA_1110 0.10 -1.2
428,658 + 9478 mRNA_1110 0.10 1.7
428,665 - 9478 mRNA_1110 0.11 0.1
428,805 - 9478 mRNA_1110 0.21 0.9
428,894 - 9478 mRNA_1110 0.27 -1.0
429,176 + 9478 mRNA_1110 0.47 1.3
429,351 + 9478 mRNA_1110 0.60 0.3
429,527 - 9478 mRNA_1110 0.72 -0.5
429,737 - 9478 mRNA_1110 0.87 -0.7
429,758 - 9478 mRNA_1110 0.89 0.5
429,919 + 0.9
429,920 - -1.5
430,032 - 1.1
430,035 - 2.3
430,038 + 0.9
430,047 + 0.2
430,047 + 1.8
430,054 + -0.2
430,074 - 1.4
430,226 + 3.7
430,229 - 0.1
430,229 - 0.5
430,344 - -1.3
430,348 - -1.2
430,350 - -1.6
430,351 + -0.5
430,467 - 9479 mRNA_1111 0.11 0.6
430,485 - 9479 mRNA_1111 0.12 -2.1
430,498 + 9479 mRNA_1111 0.13 -0.0
430,614 + 9479 mRNA_1111 0.17 0.3
430,655 + 9479 mRNA_1111 0.18 -0.8
430,670 - 9479 mRNA_1111 0.19 -1.3
430,730 + 9479 mRNA_1111 0.21 3.2
430,812 + 9479 mRNA_1111 0.24 -1.2