Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1108

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1107: 9475 - KOG0123 Polyadenylate-binding protein (RRM superfamily), at 421636 to 422494 9475 mRNA_1108: 9476 - KOG1134 Uncharacterized conserved protein, at 422767 to 426748 9476 mRNA_1109: 9477 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 426954 to 427895 9477

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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422,400 - 9475 mRNA_1107 0.89 -0.7
422,564 + -0.9
422,568 + -0.9
422,674 + 1.0
422,705 - 1.5
422,753 + 1.3
422,864 + -0.9
422,866 - 0.3
423,016 + 0.9
423,051 + 2.2
423,241 - 9476 mRNA_1108 0.12 -1.1
423,590 - 9476 mRNA_1108 0.21 0.3
423,853 - 9476 mRNA_1108 0.27 -1.4
423,904 - 9476 mRNA_1108 0.29 -1.6
424,010 - 9476 mRNA_1108 0.31 -0.0
424,461 + 9476 mRNA_1108 0.43 0.1
424,666 - 9476 mRNA_1108 0.48 -0.3
424,843 + 9476 mRNA_1108 0.52 -0.5
424,926 - 9476 mRNA_1108 0.54 0.3
424,988 - 9476 mRNA_1108 0.56 -0.5
425,177 - 9476 mRNA_1108 0.61 0.3
425,198 + 9476 mRNA_1108 0.61 -0.0
425,237 - 9476 mRNA_1108 0.62 -1.4
425,419 - 9476 mRNA_1108 0.67 -0.4
425,836 - 9476 mRNA_1108 0.77 0.1
426,175 + 9476 mRNA_1108 0.86 -0.8
426,297 - 9476 mRNA_1108 0.89 -0.2
426,298 + 9476 mRNA_1108 0.89 -0.2
426,306 - 9476 mRNA_1108 0.89 1.2
426,371 - 1.2
426,449 + -0.9
426,544 + 0.3
426,617 - 1.4
426,797 + 1.7
426,860 + 0.9
426,866 - 1.0
426,876 + 0.1
426,876 + 0.5
426,884 + 1.3
427,001 + -0.4
427,034 + 0.4
427,037 + 0.3
427,055 + 9477 mRNA_1109 0.11 0.3
427,143 - 9477 mRNA_1109 0.20 -1.1
427,296 + 9477 mRNA_1109 0.36 2.6
427,308 + 9477 mRNA_1109 0.38 -0.6
427,347 - 9477 mRNA_1109 0.42 -2.1
427,355 - 9477 mRNA_1109 0.43 1.3
427,472 + 9477 mRNA_1109 0.55 0.5
427,508 + 9477 mRNA_1109 0.59 -0.2
427,559 + 9477 mRNA_1109 0.64 3.1
427,559 + 9477 mRNA_1109 0.64 -0.2
427,605 - 9477 mRNA_1109 0.69 1.1