Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1102

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1101: 9469 - KOG1206 Peroxisomal multifunctional beta-oxidation protein and related enzymes, at 405793 to 407272 9469 mRNA_1102: 9470 - K03327 TC.MATE, SLC47A, norM, mdtK, dinF multidrug resistance protein, MATE family, at 407441 to 409508 9470 mRNA_1103: 9471 - KOG0252 Inorganic phosphate transporter, at 410090 to 412457 9471

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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406,466 - 9469 mRNA_1101 0.45 -0.0
406,488 + 9469 mRNA_1101 0.47 0.3
406,936 - 9469 mRNA_1101 0.77 0.8
406,937 - 9469 mRNA_1101 0.77 -1.2
407,066 + 9469 mRNA_1101 0.86 1.9
407,133 - -1.0
407,177 - 0.1
407,195 + 2.2
407,328 - -1.2
407,785 - 9470 mRNA_1102 0.17 0.9
407,893 + 9470 mRNA_1102 0.22 1.1
407,968 + 9470 mRNA_1102 0.25 0.2
408,058 + 9470 mRNA_1102 0.30 0.4
408,064 + 9470 mRNA_1102 0.30 0.8
408,445 - 9470 mRNA_1102 0.49 1.9
408,508 - 9470 mRNA_1102 0.52 2.2
408,521 - 9470 mRNA_1102 0.52 0.4
408,780 - 9470 mRNA_1102 0.65 2.1
408,801 + 9470 mRNA_1102 0.66 -0.5
408,902 + 9470 mRNA_1102 0.71 1.4
409,107 + 9470 mRNA_1102 0.81 2.0
409,223 + 9470 mRNA_1102 0.86 0.4
409,230 + 9470 mRNA_1102 0.87 0.5
409,513 + 2.2
409,771 - 3.2
409,790 + 1.5
409,800 - -0.0
409,827 + 0.6
409,907 + -0.4
409,935 + 0.3
409,966 - 0.2
410,045 - -0.2
410,046 + 0.6
410,105 + 0.7
410,384 - 9471 mRNA_1103 0.12 -0.3
410,402 + 9471 mRNA_1103 0.13 1.1