Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1089

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1088: 9456 - KOG3179 Predicted glutamine synthetase, at 380129 to 381362 9456 mRNA_1089: 9457 - K01638 aceB, glcB malate synthase, at 381522 to 383960 9457 mRNA_1090: 9458 - K12393 AP1M AP-1 complex subunit mu, at 384249 to 386320 9458

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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380,629 - 9456 mRNA_1088 0.41 -0.6
381,055 - 9456 mRNA_1088 0.75 0.9
381,182 - 9456 mRNA_1088 0.85 0.5
381,231 + 9456 mRNA_1088 0.89 -0.7
381,239 + -1.0
381,338 + -2.2
381,342 - -0.3
381,356 + 1.1
381,373 + 0.3
381,427 + 0.1
381,448 + -0.1
381,458 + -0.2
381,472 - -0.2
381,597 - 1.1
381,619 + -0.3
381,621 + 2.1
381,642 + 0.7
381,652 + 0.9
381,749 + 0.5
381,763 + -0.6
381,861 - 9457 mRNA_1089 0.14 -0.1
381,921 - 9457 mRNA_1089 0.16 -0.9
382,196 + 9457 mRNA_1089 0.28 1.8
382,202 + 9457 mRNA_1089 0.28 -1.0
382,496 + 9457 mRNA_1089 0.40 -2.4
382,539 + 9457 mRNA_1089 0.42 -0.2
382,540 - 9457 mRNA_1089 0.42 0.6
382,613 - 9457 mRNA_1089 0.45 0.5
382,796 + 9457 mRNA_1089 0.52 1.3
382,799 - 9457 mRNA_1089 0.52 1.1
382,888 - 9457 mRNA_1089 0.56 0.7
382,940 + 9457 mRNA_1089 0.58 -1.3
383,363 + 9457 mRNA_1089 0.75 0.2
383,548 + 9457 mRNA_1089 0.83 0.0
383,689 - 9457 mRNA_1089 0.89 -1.8
383,778 + -1.1
383,807 - 0.4
383,815 + 2.5
384,074 - 0.3