Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1087

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1086: 9454 - Hypothetical Protein, at 374386 to 377567 9454 mRNA_1087: 9455 - KOG2793 Putative N2,N2-dimethylguanosine tRNA methyltransferase, at 377970 to 379646 9455 mRNA_1088: 9456 - KOG3179 Predicted glutamine synthetase, at 380129 to 381362 9456

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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377,013 - 9454 mRNA_1086 0.83 0.8
377,065 + 9454 mRNA_1086 0.84 -0.8
377,086 - 9454 mRNA_1086 0.85 1.2
377,194 + 9454 mRNA_1086 0.88 -0.0
377,214 - 9454 mRNA_1086 0.89 0.1
377,343 - -1.5
377,487 - 1.5
377,826 - -1.7
377,839 + 1.5
377,861 - 1.1
377,978 - 0.2
378,230 - 9455 mRNA_1087 0.16 -1.5
378,570 + 9455 mRNA_1087 0.36 -0.0
378,850 - 9455 mRNA_1087 0.52 2.6
378,993 - 9455 mRNA_1087 0.61 1.1
379,147 + 9455 mRNA_1087 0.70 -0.0
379,155 + 9455 mRNA_1087 0.71 0.3
379,270 - 9455 mRNA_1087 0.78 0.1
379,737 - 0.9
379,832 + 0.8
379,861 - 1.0
379,865 + -0.3
379,870 - -0.5
379,870 - 2.6
379,995 - 1.7
380,022 + -0.3
380,036 + -0.1
380,044 - 0.5
380,054 + 0.7
380,089 + -0.4
380,174 - 1.0
380,177 + 0.9
380,346 + 9456 mRNA_1088 0.18 0.8
380,629 - 9456 mRNA_1088 0.41 -0.6