Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1073

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1072: 9440 - Hypothetical Protein, at 341677 to 343060 9440 mRNA_1073: 9441 - Hypothetical Protein, at 343845 to 345302 9441 mRNA_1074: 9442 - HMMPfam-Ankyrin repeats (3 copies)-PF12796,ProSiteProfiles-Ankyrin repeat profile.-PS50088,ProSiteProfiles-Ankyrin repeat region circular profile.-PS50297,SUPERFAMILY--SSF48403, at 346068 to 346985 9442

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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342,897 - 9440 mRNA_1072 0.88 -1.7
342,924 - -0.9
342,941 - 0.4
343,054 - -0.5
343,085 - 0.6
343,097 - 0.8
343,117 + 0.7
343,120 - 0.7
343,145 + 0.9
343,226 - 0.0
343,243 - 1.1
343,244 - 2.5
343,245 - -0.3
343,253 + 2.1
343,261 - 0.5
343,264 + -0.4
343,273 + -0.6
343,291 - 0.5
343,300 + -0.4
343,326 - 0.3
343,345 - -0.1
343,346 + 0.5
343,375 - -0.1
343,424 - 1.3
343,424 + -0.1
343,451 + 0.9
343,566 + -0.0
343,584 - 1.5
343,693 + 2.1
344,009 + 9441 mRNA_1073 0.11 0.9
344,250 - 9441 mRNA_1073 0.28 2.7
344,271 + 9441 mRNA_1073 0.29 1.0
344,542 - 9441 mRNA_1073 0.48 0.8
344,723 - 9441 mRNA_1073 0.60 0.7
344,837 - 9441 mRNA_1073 0.68 1.5
344,951 + 9441 mRNA_1073 0.76 1.0
345,059 + 9441 mRNA_1073 0.83 0.3
345,162 - -0.4
345,166 + -1.5
345,257 - 0.4
345,455 - 0.9
345,461 + -1.1
345,640 - 1.0
345,646 + -0.1
345,931 + -1.4
345,934 - 1.0
346,283 - 9442 mRNA_1074 0.23 -2.5