Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1065

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1064: 9432 - K05533 ANP1 mannan polymerase II complex ANP1 subunit, at 316506 to 317869 9432 mRNA_1065: 9433 - Hypothetical Protein, at 318251 to 319455 9433 mRNA_1066: 9434 - KOG1383 Glutamate decarboxylase/sphingosine phosphate lyase, at 320131 to 322252 9434

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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317,787 + 0.7
317,932 - 0.4
317,936 - 0.5
317,947 - -0.6
318,078 - 0.1
318,078 - -0.5
318,090 + 0.9
318,097 + 0.5
318,098 + 1.0
318,100 - 0.2
318,101 + 0.1
318,199 + -1.3
318,394 - 9433 mRNA_1065 0.12 1.9
318,398 + 9433 mRNA_1065 0.12 -0.5
318,404 - 9433 mRNA_1065 0.13 1.4
318,560 + 9433 mRNA_1065 0.26 0.5
318,820 - 9433 mRNA_1065 0.47 -1.6
319,586 + -1.1
319,669 - 1.0
319,690 + 0.9
319,691 + -0.3
319,744 + 0.4
319,766 - 0.6
319,783 + 0.6
319,802 + -1.3
319,836 - 0.1
319,853 - 0.2
319,859 + -0.1
319,866 - 0.4
319,868 - 1.5
319,953 + 1.9
320,120 - 0.1
320,239 - 0.5
320,249 - 1.6
320,273 + -1.7
320,303 + 0.6
320,381 + 9434 mRNA_1066 0.12 -1.5
320,387 + 9434 mRNA_1066 0.12 -1.2
320,445 - 9434 mRNA_1066 0.15 0.7
320,445 + 9434 mRNA_1066 0.15 2.6