Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1061

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1060: 9428 - K01530 E3.6.3.1 phospholipid-translocating ATPase, at 301806 to 307768 9428 mRNA_1061: 9429 - BLAST heat shock 70 kDa protein 12A [Rhizoctonia solani AG-..., at 308503 to 311284 9429 mRNA_1062: 9430 - K10742 DNA2 DNA replication ATP-dependent helicase Dna2, at 311379 to 314968 9430

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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307,550 - -0.3
307,837 - 0.3
307,850 + -0.5
307,861 - 0.4
307,965 - -0.2
308,021 - 1.7
308,152 - 1.2
308,283 + -0.6
308,334 + -0.9
308,619 - -0.3
309,107 + 9429 mRNA_1061 0.22 0.1
309,165 - 9429 mRNA_1061 0.24 -0.3
309,437 - 9429 mRNA_1061 0.34 -1.1
309,475 + 9429 mRNA_1061 0.35 0.4
309,718 + 9429 mRNA_1061 0.44 0.5
310,172 - 9429 mRNA_1061 0.60 1.9
310,215 - 9429 mRNA_1061 0.62 0.0
310,271 - 9429 mRNA_1061 0.64 -1.5
310,317 + 9429 mRNA_1061 0.65 0.3
310,578 - 9429 mRNA_1061 0.75 0.9
310,646 - 9429 mRNA_1061 0.77 1.5
310,646 - 9429 mRNA_1061 0.77 1.2
310,665 + 9429 mRNA_1061 0.78 0.7
310,707 - 9429 mRNA_1061 0.79 1.2
310,752 - 9429 mRNA_1061 0.81 -2.7
310,755 - 9429 mRNA_1061 0.81 1.0
310,758 + 9429 mRNA_1061 0.81 -0.2
310,767 + 9429 mRNA_1061 0.81 0.5
310,971 + 9429 mRNA_1061 0.89 -0.1
311,062 + -0.1
311,217 + 0.3
311,349 + 0.1
311,349 - -0.2
311,372 + -1.1
311,393 + -0.4
311,905 - 9430 mRNA_1062 0.15 1.3