Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1058

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1057: 9425 - K00654 SPT serine palmitoyltransferase, at 295775 to 298601 9425 mRNA_1058: 9426 - HMMPfam-Protein of unknown function (DUF1115)-PF06544,PIRSF--PIRSF038021,SUPERFAMILY--SSF54495, at 298923 to 300090 9426 mRNA_1059: 9427 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 300871 to 301562 9427

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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298,811 - 0.4
298,816 + -0.8
298,933 - 1.4
299,089 + 9426 mRNA_1058 0.14 -0.5
299,258 + 9426 mRNA_1058 0.29 1.0
299,412 + 9426 mRNA_1058 0.42 1.9
299,540 - 9426 mRNA_1058 0.53 -1.5
299,666 - 9426 mRNA_1058 0.64 0.5
299,762 + 9426 mRNA_1058 0.72 -0.5
299,786 - 9426 mRNA_1058 0.74 -0.3
299,799 + 9426 mRNA_1058 0.75 -0.6
299,927 - 9426 mRNA_1058 0.86 1.4
299,927 - 9426 mRNA_1058 0.86 0.7
300,002 + -0.1
300,087 - 0.3
300,088 + 2.1
300,097 + -1.0
300,104 - 1.3
300,110 - -1.4
300,114 - -0.9
300,125 + -0.8
300,126 + -0.4
300,286 + 0.5
300,699 - 0.0
300,705 - -0.7
300,955 - 9427 mRNA_1059 0.12 1.0
300,969 - 9427 mRNA_1059 0.14 0.2
300,971 + 9427 mRNA_1059 0.14 0.2