Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1051

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1049: 9417 - K12878 THOC1 THO complex subunit 1, at 274076 to 276723 9417 mRNA_1050: 9418 - Hypothetical Protein, at 277002 to 277499 9418 mRNA_1051: 9419 - SUPERFAMILY--SSF54928, at 277584 to 281665 9419 mRNA_1052: 9420 - K10896 FANCM fanconi anemia group M protein, at 282030 to 286830 9420

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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276,722 - 0.3
276,759 + 0.7
276,785 + 0.1
276,920 + -1.1
276,920 - 2.3
276,925 + 0.2
276,928 + 0.1
276,930 + 0.8
276,931 - 1.9
276,949 + -0.4
276,960 - 0.4
277,069 - 9418 mRNA_1050 0.13 -1.2
277,209 + 9418 mRNA_1050 0.42 0.5
277,243 + 9418 mRNA_1050 0.48 0.7
277,349 - 9418 mRNA_1050 0.70 -0.1
277,353 + 9418 mRNA_1050 0.70 -0.6
277,381 + 9418 mRNA_1050 0.76 0.6
278,259 + 9419 mRNA_1051 0.17 -0.1
278,286 + 9419 mRNA_1051 0.17 -0.6
278,711 + 9419 mRNA_1051 0.28 -1.4
278,818 - 9419 mRNA_1051 0.30 -0.3
279,031 + 9419 mRNA_1051 0.35 -1.9
279,068 - 9419 mRNA_1051 0.36 -0.6
279,117 - 9419 mRNA_1051 0.38 4.1
279,157 + 9419 mRNA_1051 0.39 -0.7
279,173 + 9419 mRNA_1051 0.39 1.9
279,364 - 9419 mRNA_1051 0.44 0.2
279,454 - 9419 mRNA_1051 0.46 -0.3
279,460 - 9419 mRNA_1051 0.46 2.2
279,541 - 9419 mRNA_1051 0.48 -0.3
279,582 - 9419 mRNA_1051 0.49 0.5
279,694 - 9419 mRNA_1051 0.52 0.9
279,843 + 9419 mRNA_1051 0.55 0.9
280,171 + 9419 mRNA_1051 0.63 1.4
280,295 + 9419 mRNA_1051 0.66 0.1
280,325 + 9419 mRNA_1051 0.67 -0.8
280,907 + 9419 mRNA_1051 0.81 -0.5
280,909 - 9419 mRNA_1051 0.81 0.2
280,930 + 9419 mRNA_1051 0.82 -1.9
281,194 - 9419 mRNA_1051 0.88 -0.6
281,482 - 0.1
281,640 + 0.1
281,799 - 1.8
281,809 - 0.2
281,815 - 0.4
281,817 + 1.7
281,819 - 1.2
281,841 - -1.0
281,932 - 0.3
281,951 - 0.5
281,966 - -1.9
281,986 + 1.4
282,006 + -0.1
282,080 + 0.5
282,129 - -1.1
282,161 + -0.9
282,407 + -0.3
282,438 + -0.8
282,494 + -0.0
282,502 + 0.3
282,574 - 9420 mRNA_1052 0.11 -0.5