Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1049

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1048: 9416 - KOG1812 Predicted E3 ubiquitin ligase, at 272884 to 273999 9416 mRNA_1049: 9417 - K12878 THOC1 THO complex subunit 1, at 274076 to 276723 9417 mRNA_1050: 9418 - Hypothetical Protein, at 277002 to 277499 9418 mRNA_1051: 9419 - SUPERFAMILY--SSF54928, at 277584 to 281665 9419

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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273,098 - 9416 mRNA_1048 0.19 2.0
273,139 + 9416 mRNA_1048 0.23 0.0
273,140 + 9416 mRNA_1048 0.23 2.2
273,260 + 9416 mRNA_1048 0.34 1.4
273,263 - 9416 mRNA_1048 0.34 3.1
273,528 + 9416 mRNA_1048 0.58 -0.4
273,534 + 9416 mRNA_1048 0.58 -1.6
273,809 + 9416 mRNA_1048 0.83 -0.6
273,833 - 9416 mRNA_1048 0.85 0.9
274,158 + -0.2
274,396 + 9417 mRNA_1049 0.12 0.4
275,016 - 9417 mRNA_1049 0.35 0.5
275,025 + 9417 mRNA_1049 0.36 0.8
275,337 + 9417 mRNA_1049 0.48 1.7
275,611 + 9417 mRNA_1049 0.58 -0.8
275,725 - 9417 mRNA_1049 0.62 1.3
276,722 - 0.3
276,759 + 0.7
276,785 + 0.1
276,920 + -1.1
276,920 - 2.3
276,925 + 0.2
276,928 + 0.1
276,930 + 0.8
276,931 - 1.9
276,949 + -0.4
276,960 - 0.4
277,069 - 9418 mRNA_1050 0.13 -1.2
277,209 + 9418 mRNA_1050 0.42 0.5
277,243 + 9418 mRNA_1050 0.48 0.7
277,349 - 9418 mRNA_1050 0.70 -0.1
277,353 + 9418 mRNA_1050 0.70 -0.6
277,381 + 9418 mRNA_1050 0.76 0.6