Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1026

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1025: 9393 - BLAST MIND kinetochore complex component Nnf1 [Trichophyton..., at 232781 to 233762 9393 mRNA_1026: 9394 - HMMPfam-Protein of unknown function (DUF3317)-PF11779, at 233944 to 234631 9394 mRNA_1027: 9395 - Hypothetical Protein, at 235522 to 235827 9395

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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233,809 - 0.8
233,815 - 0.2
233,820 + -1.5
233,822 + 0.0
233,825 - 2.3
233,825 - 0.4
233,839 - 0.5
233,843 - 2.6
233,846 + -2.5
233,851 + 0.0
233,874 + -1.3
233,945 - 0.1
233,954 - -3.6
233,965 - 1.3
233,971 - -1.4
233,974 - -2.7
233,974 + 0.1
233,986 - 1.1
233,986 - 0.6
234,056 - 9394 mRNA_1026 0.16 1.6
234,127 + 9394 mRNA_1026 0.27 0.3
234,130 - 9394 mRNA_1026 0.27 -0.4
234,880 + 0.6
235,005 - -0.2
235,013 + 0.2
235,271 - 0.7
235,484 + 1.0
235,488 + 1.0
235,492 - -0.1
235,594 - 9395 mRNA_1027 0.24 1.9