Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1022

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1021: 9389 - KOG3457 Sec61 protein translocation complex, beta subunit, at 223629 to 224377 9389 mRNA_1022: 9390 - KOG1550 Extracellular protein SEL-1 and related proteins, at 224870 to 227887 9390 mRNA_1023: 9391 - K08272 CAB39, MO25 calcium binding protein 39, at 228517 to 230203 9391

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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224,301 + 9389 mRNA_1021 0.90 -1.1
224,562 - 0.4
224,590 - 1.3
224,611 + -1.5
224,632 + -1.3
224,710 - -0.3
224,750 + -0.3
224,752 - 0.3
224,770 + 0.5
224,778 + -1.0
224,901 + 0.2
224,905 - 2.7
224,908 + -1.6
224,920 + 1.0
224,924 + 1.5
224,925 + -0.8
225,053 + 0.6
225,192 + 9390 mRNA_1022 0.11 -0.5
225,302 - 9390 mRNA_1022 0.14 1.8
225,341 + 9390 mRNA_1022 0.16 -0.4
225,776 - 9390 mRNA_1022 0.30 1.5
225,875 + 9390 mRNA_1022 0.33 -1.4
225,891 + 9390 mRNA_1022 0.34 -0.6
225,977 + 9390 mRNA_1022 0.37 1.3
227,537 + 9390 mRNA_1022 0.88 -0.4
227,674 - -0.3
227,950 - -0.0
228,243 + 0.4
228,257 - 0.3
228,385 - -0.8