Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1020

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1019: 9387 - K02835 prfA, MTRF1, MRF1 peptide chain release factor 1, at 220275 to 221904 9387 mRNA_1020: 9388 - K01527 EGD1, BTF3 nascent polypeptide-associated complex subunit beta, at 222142 to 223175 9388 mRNA_1021: 9389 - KOG3457 Sec61 protein translocation complex, beta subunit, at 223629 to 224377 9389

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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221,932 - -0.3
221,937 - -0.3
221,958 - 2.4
222,077 - -0.4
222,081 - -0.3
222,082 - -0.1
222,083 - -0.4
222,086 + -0.2
222,100 - 0.8
222,106 - -0.6
222,265 + 9388 mRNA_1020 0.12 0.8
222,270 - 9388 mRNA_1020 0.12 -0.9
222,416 - 9388 mRNA_1020 0.26 0.1
222,538 - 9388 mRNA_1020 0.38 -1.6
222,576 - 9388 mRNA_1020 0.42 2.5
222,823 + 9388 mRNA_1020 0.66 -0.1
222,830 + 9388 mRNA_1020 0.67 1.2
223,000 - 9388 mRNA_1020 0.83 0.4
223,294 - 1.3
223,452 + 0.0
223,574 + -0.4