Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1008

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1007: 9375 - HMMPfam-S1/P1 Nuclease-PF02265,SUPERFAMILY--SSF48537, at 191628 to 193033 9375 mRNA_1008: 9376 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 193375 to 193873 9376 mRNA_1009: 9377 - K12659 ARG56 N-acetyl-gamma-glutamyl-phosphate reductase / acetylglutamate kinase, at 194159 to 197453 9377

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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192,491 - 9375 mRNA_1007 0.61 -1.4
192,933 + 1.2
193,240 - 0.2
193,418 + 0.3
193,652 - 9376 mRNA_1008 0.56 1.4
193,652 - 9376 mRNA_1008 0.56 -0.1
193,668 - 9376 mRNA_1008 0.59 -0.3
193,680 + 9376 mRNA_1008 0.61 2.0
193,806 - 9376 mRNA_1008 0.86 -0.3
193,830 - -1.1
193,832 + 1.1
193,950 - 1.1
193,953 - 2.0
193,963 - -0.2
193,965 - -0.9
193,971 + -0.3
193,971 - 0.4
193,974 - 2.8
193,974 - 0.2
193,975 + 1.4
193,978 - -0.3
193,988 - 0.0
193,990 + -0.0
194,000 + 0.2
194,104 + -0.8
194,109 - -0.7
194,110 + 0.6
194,112 - 0.4
194,140 + -0.7
194,231 + 1.9
194,236 + 0.7
194,255 - -0.0
194,396 + -0.4
194,402 - -3.4
194,426 - 0.4
194,575 + 9377 mRNA_1009 0.13 1.9
194,576 + 9377 mRNA_1009 0.13 -0.9