Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1000

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_999: 9367 - HMMPfam-PAPA-1-like conserved region-PF04795, at 169197 to 171213 9367 mRNA_1000: 9368 - BLAST glycosyltransferase 2 [Moniliophthora roreri MCA ..., at 171507 to 175243 9368 mRNA_1001: 9369 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 175417 to 177383 9369

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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170,552 - 9367 mRNA_999 0.67 0.3
170,697 + 9367 mRNA_999 0.74 0.2
170,712 + 9367 mRNA_999 0.75 -1.2
170,853 + 9367 mRNA_999 0.82 -1.1
171,016 - -0.3
171,064 - -0.1
171,071 - 3.7
171,114 - 0.1
171,140 + 1.0
171,170 + 0.5
171,274 + 0.8
171,285 + 0.5
171,414 - -1.0
171,424 - 0.7
171,558 - 0.8
171,568 + 2.0
171,569 - -0.4
172,063 + 9368 mRNA_1000 0.15 1.7
172,413 + 9368 mRNA_1000 0.24 -0.7
172,467 + 9368 mRNA_1000 0.26 -0.4
172,867 + 9368 mRNA_1000 0.36 1.3
172,877 + 9368 mRNA_1000 0.37 0.4
173,224 + 9368 mRNA_1000 0.46 1.4
173,647 - 9368 mRNA_1000 0.57 1.4
173,834 - 9368 mRNA_1000 0.62 1.3
174,236 - 9368 mRNA_1000 0.73 2.9
174,279 - 9368 mRNA_1000 0.74 1.9
174,840 - 9368 mRNA_1000 0.89 0.5
174,847 + 9368 mRNA_1000 0.89 -0.7
174,873 - 2.6
174,880 + 2.3
174,981 - 0.9
175,107 - 1.0
175,644 + 9369 mRNA_1001 0.12 1.9
175,675 - 9369 mRNA_1001 0.13 0.9
175,697 - 9369 mRNA_1001 0.14 0.2
175,794 + 9369 mRNA_1001 0.19 0.0
176,105 - 9369 mRNA_1001 0.35 -0.5
176,143 + 9369 mRNA_1001 0.37 -0.1