Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_977

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_976: 9344 - SUPERFAMILY--SSF54928, at 118269 to 121735 9344 mRNA_977: 9345 - KOG1378 Purple acid phosphatase, at 122098 to 123952 9345 mRNA_978: 9346 - Hypothetical Protein, at 124413 to 124580 9346 mRNA_979: 9347 - K03123 TFIIA2, GTF2A2, TOA2 transcription initiation factor TFIIA small subunit, at 124895 to 125472 9347

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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121,167 - 9344 mRNA_976 0.84 -0.0
121,184 - 9344 mRNA_976 0.84 0.8
121,334 - 9344 mRNA_976 0.88 1.2
121,601 + 2.1
121,628 - 0.0
121,649 - 0.3
121,735 + 1.0
121,950 + 0.1
122,112 - 0.2
122,475 + 9345 mRNA_977 0.20 -0.4
122,600 - 9345 mRNA_977 0.27 -0.5
122,764 - 9345 mRNA_977 0.36 0.1
122,768 - 9345 mRNA_977 0.36 1.0
122,935 + 9345 mRNA_977 0.45 -0.4
122,935 + 9345 mRNA_977 0.45 1.4
123,069 - 9345 mRNA_977 0.52 -1.5
123,291 + 9345 mRNA_977 0.64 -0.1
123,339 + 9345 mRNA_977 0.67 1.8
123,372 - 9345 mRNA_977 0.69 1.5
123,375 + 9345 mRNA_977 0.69 0.0
123,478 - 9345 mRNA_977 0.74 -0.3
123,613 + 9345 mRNA_977 0.82 -0.2
124,118 + 1.6
124,273 - 0.2
124,404 - -0.2
124,408 + 2.0
124,532 - 9346 mRNA_978 0.71 0.2
124,541 + 9346 mRNA_978 0.76 0.4
124,683 + 2.2
124,703 - 0.3
124,717 + -1.5
124,722 + 0.8
124,838 - -0.3
124,852 - -1.0
124,855 - 1.1