Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_963

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_962: 9330 - Hypothetical Protein, at 82973 to 83563 9330 mRNA_963: 9331 - K15109 SLC25A20_29, CACT, CACL, CRC1 solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29, at 84124 to 85910 9331 mRNA_964: 9332 - Hypothetical Protein, at 86721 to 89416 9332

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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83,202 + 9330 mRNA_962 0.39 2.2
83,218 + 9330 mRNA_962 0.41 -0.2
83,218 - 9330 mRNA_962 0.41 1.6
83,225 + 9330 mRNA_962 0.43 -0.9
83,225 + 9330 mRNA_962 0.43 2.8
83,373 + 9330 mRNA_962 0.68 -0.1
83,388 + 9330 mRNA_962 0.70 2.0
83,394 + 9330 mRNA_962 0.71 0.0
83,506 - 0.5
83,515 - -1.0
83,659 + 0.1
83,676 + -0.1
83,678 - 0.1
83,685 + 1.0
83,731 + -1.6
83,733 - 1.1
83,738 + -1.7
83,738 - 1.3
83,741 + 0.7
83,746 - 1.4
83,753 - -1.2
83,753 - 0.6
83,769 + 0.1
83,769 - 0.6
83,769 - -0.1
83,772 - -1.3
83,776 + -1.0
83,806 - -0.1
83,814 + -1.3
83,814 - 2.1
83,818 - 0.6
83,833 + -0.2
83,846 + 0.5
83,857 - 0.2
83,865 + 1.2
83,878 + 0.8
83,948 + 1.2
83,968 + 2.3
84,094 + 1.8
84,110 - -0.0
84,118 - 3.3
84,832 + 9331 mRNA_963 0.40 -2.0
85,271 + 9331 mRNA_963 0.64 -0.9
85,392 + 9331 mRNA_963 0.71 0.1
85,857 - -0.3
85,974 - 0.7
85,975 + 0.5
85,986 + 0.6
85,991 - -0.2
86,007 + -0.1
86,013 + -0.6
86,013 + 0.1
86,019 + 1.5
86,022 + 0.6
86,073 - -0.1
86,083 - 3.0
86,089 - -0.4
86,090 + -1.4
86,094 + -0.2
86,095 + 0.7
86,097 + 2.6
86,104 - 1.6
86,108 + 0.2
86,119 + -0.4
86,124 - -0.1
86,130 + -1.0
86,132 + 0.4
86,133 + 0.9
86,138 - 0.1
86,140 - -0.1
86,266 + -0.3
86,420 + 1.1
86,477 + 0.7
86,595 + 0.3
86,661 + -1.2
86,881 + 0.3