Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_957

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_956: 9324 - KOG2466 Uridine permease/thiamine transporter/allantoin transport, at 64037 to 66119 9324 mRNA_957: 9325 - K07160 K07160 UPF0271 protein, at 67059 to 67959 9325 mRNA_958: 9326 - K14541 DUR1 urea carboxylase / allophanate hydrolase, at 68505 to 72950 9326

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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66,238 + 2.9
66,268 + -0.9
66,282 - -1.4
66,323 + 0.8
66,333 - 2.1
66,359 - 0.8
66,367 + 2.1
66,375 - 0.2
66,382 + 2.1
66,418 - 0.2
66,676 - -0.2
66,676 + 0.3
66,693 + 0.1
66,701 - 0.5
66,812 + 1.8
66,836 + -0.3
66,842 - 0.1
66,891 + 0.1
66,892 - 1.8
66,962 - -1.0
66,972 + 0.1
67,008 + -0.4
67,126 + -0.5
67,126 + 1.8
67,135 + 1.0
67,269 - 9325 mRNA_957 0.23 -1.3
67,390 - 9325 mRNA_957 0.37 -0.1
67,540 - 9325 mRNA_957 0.53 0.8
67,541 + 9325 mRNA_957 0.53 -0.5
67,567 - 9325 mRNA_957 0.56 0.3
67,590 + 9325 mRNA_957 0.59 -0.3
67,706 + 9325 mRNA_957 0.72 -0.2
67,709 - 9325 mRNA_957 0.72 -0.7
67,719 - 9325 mRNA_957 0.73 1.4
67,751 + 9325 mRNA_957 0.77 -0.4
68,023 - 1.8
68,047 + 0.9
68,132 + 0.2
68,141 - 2.4
68,156 + -0.4
68,166 - 0.1
68,167 - -0.7
68,189 - -0.5
68,340 - -0.4
68,448 - 0.9
68,470 - 1.2
68,476 + 1.3
68,493 + 1.0
68,624 - 0.4
68,680 - -1.2
68,727 - 0.2
68,784 + 1.6
68,882 + 0.3
68,917 + 0.0
68,930 + -0.3