Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_948

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_947: 9315 - K00623 CHAT choline O-acetyltransferase, at 38984 to 41581 9315 mRNA_948: 9316 - KOG2641 Predicted seven transmembrane receptor - rhodopsin family, at 41701 to 44858 9316 mRNA_949: 9317 - KOG1268 Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains, at 45301 to 46716 9317

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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41,053 - 9315 mRNA_947 0.80 1.0
41,213 + 9315 mRNA_947 0.86 0.5
41,256 - 9315 mRNA_947 0.87 -0.2
41,491 + -0.5
41,509 - -0.5
41,539 + -1.7
41,611 - 0.9
41,633 - 1.8
41,633 - -1.3
41,645 + 0.1
41,656 + 0.9
41,659 + -2.9
41,665 + 0.1
41,671 + 2.0
41,806 - -1.6
41,993 + 1.1
42,116 - 9316 mRNA_948 0.13 0.4
42,122 + 9316 mRNA_948 0.13 3.2
42,180 + 9316 mRNA_948 0.15 -1.1
42,265 + 9316 mRNA_948 0.18 -1.1
42,398 - 9316 mRNA_948 0.22 0.3
42,441 + 9316 mRNA_948 0.23 -2.3
42,665 - 9316 mRNA_948 0.31 1.2
42,879 + 9316 mRNA_948 0.37 2.2
43,018 - 9316 mRNA_948 0.42 -0.4
43,143 + 9316 mRNA_948 0.46 0.7
43,150 - 9316 mRNA_948 0.46 0.3
43,605 - 9316 mRNA_948 0.60 -0.9
43,688 - 9316 mRNA_948 0.63 -0.4
43,864 + 9316 mRNA_948 0.68 0.7
44,000 - 9316 mRNA_948 0.73 1.0
44,001 - 9316 mRNA_948 0.73 0.2
44,022 + 9316 mRNA_948 0.73 0.2
44,172 - 9316 mRNA_948 0.78 -0.4
44,297 - 9316 mRNA_948 0.82 1.3
44,503 - 9316 mRNA_948 0.89 -0.0
44,900 + 0.2
45,025 + -0.5
45,026 - 1.3
45,037 + 0.2
45,044 + 1.3
45,056 + 0.2
45,188 + 0.4
45,342 + 0.2
45,465 + 9317 mRNA_949 0.12 0.7
45,482 - 9317 mRNA_949 0.13 1.5
45,484 + 9317 mRNA_949 0.13 -0.0
45,586 + 9317 mRNA_949 0.20 1.9
45,590 + 9317 mRNA_949 0.20 0.3
45,590 - 9317 mRNA_949 0.20 0.3
45,596 - 9317 mRNA_949 0.21 -2.2
45,619 + 9317 mRNA_949 0.22 -0.1
45,755 - 9317 mRNA_949 0.32 -0.2