Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_941

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_940: 9308 - Hypothetical Protein, at 25419 to 26964 9308 mRNA_941: 9309 - HMMPfam-Calcineurin-like phosphoesterase-PF00149,SUPERFAMILY--SSF56300, at 27276 to 29421 9309 mRNA_942: 9310 - KOG1743 Ferric reductase-like proteins, at 29520 to 30621 9310

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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26,379 + 9308 mRNA_940 0.62 2.1
26,433 - 9308 mRNA_940 0.66 0.4
26,439 - 9308 mRNA_940 0.66 1.1
26,441 - 9308 mRNA_940 0.66 -1.1
26,457 - 9308 mRNA_940 0.67 0.2
26,516 - 9308 mRNA_940 0.71 -0.7
26,556 + 9308 mRNA_940 0.74 2.4
26,560 + 9308 mRNA_940 0.74 0.8
26,561 - 9308 mRNA_940 0.74 1.4
26,566 + 9308 mRNA_940 0.74 1.2
26,619 + 9308 mRNA_940 0.78 0.7
26,629 + 9308 mRNA_940 0.78 -0.3
26,672 - 9308 mRNA_940 0.81 0.1
26,727 + 9308 mRNA_940 0.85 0.4
26,727 - 9308 mRNA_940 0.85 -0.5
26,727 - 9308 mRNA_940 0.85 0.3
26,728 + 9308 mRNA_940 0.85 -0.4
26,820 + -0.4
26,822 + 1.2
26,866 - -0.9
26,869 + 1.4
26,891 + -1.1
26,960 - -0.2
27,001 - 2.1
27,021 + 2.7
27,021 - 2.3
27,025 - 0.6
27,025 - -0.2
27,074 - 0.7
27,119 + 0.8
27,156 - -0.1
27,159 - -0.9
27,197 + 0.9
27,409 - 1.0
27,417 - 1.5
27,443 - 0.1
27,447 - -2.9
27,470 - 0.8
27,507 + 9309 mRNA_941 0.11 0.6
27,559 + 9309 mRNA_941 0.13 0.8
27,562 - 9309 mRNA_941 0.13 -0.0
28,047 - 9309 mRNA_941 0.36 -0.5
28,098 + 9309 mRNA_941 0.38 -1.4
28,120 + 9309 mRNA_941 0.39 1.0
28,204 - 9309 mRNA_941 0.43 0.1
28,485 + 9309 mRNA_941 0.56 1.5
28,717 + 9309 mRNA_941 0.67 0.7
28,719 - 9309 mRNA_941 0.67 0.0
28,877 - 9309 mRNA_941 0.75 -1.2
28,976 - 9309 mRNA_941 0.79 0.5
29,208 - -1.4
29,253 - -0.5
29,258 + 0.9
29,268 + 2.3
29,303 + 0.9
29,378 + 1.4
29,392 - -0.4
29,402 + -0.5
29,463 - 0.1
29,474 + 1.3
30,419 + 9310 mRNA_942 0.82 -0.4