Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_930

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_930: 9298 - K00861 RFK, FMN1 riboflavin kinase, at 359 to 1600 9298 mRNA_931: 9299 - K14794 RRP12 ribosomal RNA-processing protein 12, at 1838 to 6021 9299

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1 + 1.1
1 + 0.2
1 + 1.7
1 + 0.7
1 + 1.2
2 + 0.9
2 + 0.1
5 + 0.3
18 + -0.3
30 + -0.7
37 + -1.0
37 + 0.3
41 + -0.0
42 + 0.7
44 + 0.2
49 + 1.2
49 + -0.6
50 + -0.5
54 + 0.1
58 - 0.4
60 - -0.3
60 + -0.6
60 - 0.3
61 - 1.9
61 + -1.3
63 + 0.9
63 + -0.1
63 + 0.7
63 + -0.2
63 + 0.5
63 + -0.6
64 + -1.5
66 - -0.5
66 + 1.5
70 + 0.6
70 + -0.2
70 - 0.0
71 + -0.5
73 + -0.6
75 - -0.7
77 - -2.2
78 + 0.1
78 - -0.4
78 + 0.6
78 + 1.1
78 + -2.2
78 + -0.3
78 + 1.7
78 + 0.4
78 + -1.0
79 + 1.2
81 - -0.1
81 - 2.0
82 + -2.1
85 + -0.6
104 + -0.3
126 + 0.2
126 + -0.9
128 - 1.8
135 + 0.5
142 + 0.6
150 + 0.3
154 + -0.0
157 + 0.3
171 - -0.3
171 + 1.4
172 + -0.3
172 + -0.5
175 - 1.0
176 - 0.4
177 - -0.3
177 - 0.2
191 - 1.2
192 + 1.3
192 + 0.9
192 + 1.0
193 + -2.3
193 + 0.5
193 + -2.2
198 - -1.8
218 + 2.0
225 + 0.2
235 + -1.3
242 + -0.3
263 - 2.1
293 + 0.3
303 + 1.8
333 - 0.0
339 - 0.7
348 + 0.7
349 + 2.0
377 - -0.0
381 - -0.1
469 + -0.5
487 - 9298 mRNA_930 0.10 0.3
722 + 9298 mRNA_930 0.29 0.1
1,641 - 2.1
1,656 - -0.7
1,768 - -0.6
1,778 - 0.8
1,794 + 1.0