Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_927

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_926: 9294 - K20647 ARHGAP32 Rho GTPase-activating protein 32, at 2208213 to 2211495 9294 mRNA_927: 9295 - KOG1611 Predicted short chain-type dehydrogenase, at 2211766 to 2213032 9295 mRNA_928: 9296 - Hypothetical Protein, at 2213301 to 2214624 9296

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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2,210,848 - 9294 mRNA_926 0.80 0.5
2,211,008 + 9294 mRNA_926 0.85 1.8
2,211,138 - 9294 mRNA_926 0.89 -0.3
2,211,230 + -2.2
2,211,261 - -0.5
2,211,269 - 0.4
2,211,293 + 0.1
2,211,385 - -0.1
2,211,610 - 0.6
2,211,627 - 1.6
2,211,678 + -0.2
2,211,681 + 1.6
2,211,723 + -0.5
2,211,723 + -1.3
2,211,723 + -0.9
2,211,758 + 0.5
2,211,787 - 1.0
2,211,902 + 9295 mRNA_927 0.11 1.1
2,211,904 - 9295 mRNA_927 0.11 0.2
2,211,935 + 9295 mRNA_927 0.13 -1.8
2,211,944 + 9295 mRNA_927 0.14 1.3
2,212,030 - 9295 mRNA_927 0.21 -0.0
2,212,032 - 9295 mRNA_927 0.21 -0.0
2,212,035 - 9295 mRNA_927 0.21 1.0
2,212,043 + 9295 mRNA_927 0.22 3.0
2,212,065 - 9295 mRNA_927 0.24 0.4
2,212,097 + 9295 mRNA_927 0.26 0.7
2,212,200 - 9295 mRNA_927 0.34 1.4
2,212,205 + 9295 mRNA_927 0.35 0.2
2,212,286 - 9295 mRNA_927 0.41 -0.2
2,212,309 + 9295 mRNA_927 0.43 1.2
2,212,330 + 9295 mRNA_927 0.45 1.5
2,212,333 - 9295 mRNA_927 0.45 2.7
2,212,333 - 9295 mRNA_927 0.45 0.1
2,212,365 - 9295 mRNA_927 0.47 -2.1
2,212,368 + 9295 mRNA_927 0.48 -0.6
2,212,489 + 9295 mRNA_927 0.57 -1.0
2,212,492 + 9295 mRNA_927 0.57 -1.0
2,212,494 + 9295 mRNA_927 0.57 1.5
2,212,514 - 9295 mRNA_927 0.59 1.7
2,212,531 - 9295 mRNA_927 0.60 1.8
2,212,604 - 9295 mRNA_927 0.66 -0.2
2,212,611 + 9295 mRNA_927 0.67 -2.3
2,212,617 - 9295 mRNA_927 0.67 1.1
2,212,637 + 9295 mRNA_927 0.69 0.6
2,212,640 - 9295 mRNA_927 0.69 0.3
2,212,659 - 9295 mRNA_927 0.70 -0.2
2,212,669 + 9295 mRNA_927 0.71 1.1
2,212,755 - 9295 mRNA_927 0.78 0.3
2,212,834 - 9295 mRNA_927 0.84 -1.0
2,212,912 - -0.5
2,212,951 - 1.2
2,212,957 + 1.2
2,213,037 - -1.0
2,213,066 - 2.3
2,213,082 - 0.8
2,213,102 - 0.3
2,213,115 + -0.4
2,213,122 + 0.8
2,213,221 - 0.7
2,213,230 + 1.2
2,213,236 - -0.9
2,213,240 + 0.6
2,213,242 - 1.6
2,213,243 + -0.1
2,213,257 + 1.4
2,213,381 + 0.8
2,213,387 + 0.6
2,213,388 - -1.8
2,213,390 + -1.2
2,213,390 - 0.4
2,213,393 - -0.2
2,213,399 - 0.8
2,213,412 - 0.0
2,213,414 + 2.3
2,213,477 - 9296 mRNA_928 0.13 1.4
2,213,555 - 9296 mRNA_928 0.19 2.5
2,213,558 + 9296 mRNA_928 0.19 1.3
2,213,585 - 9296 mRNA_928 0.21 -0.9
2,213,671 + 9296 mRNA_928 0.28 1.2
2,213,699 - 9296 mRNA_928 0.30 -0.2
2,213,703 - 9296 mRNA_928 0.30 0.4
2,213,709 - 9296 mRNA_928 0.31 -0.6
2,213,731 + 9296 mRNA_928 0.32 0.7
2,213,764 - 9296 mRNA_928 0.35 -0.0
2,213,832 - 9296 mRNA_928 0.40 2.7
2,213,855 + 9296 mRNA_928 0.42 1.6
2,213,860 + 9296 mRNA_928 0.42 -0.8
2,213,863 - 9296 mRNA_928 0.42 0.4
2,213,991 - 9296 mRNA_928 0.52 0.4
2,214,012 - 9296 mRNA_928 0.54 0.1